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Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B, Shank SD, Weaver S, MacLean OA, Orton RJ, Lemey P, Boni MF, Tegally H, Harkins G, Scheepers C, Bhiman JN, Everatt J, Amoako DG, San JE, Giandhari J, Sigal A; NGS-SA; Williamson C, Hsiao NY, von Gottberg A, De Klerk A, Shafer RW, Robertson DL, Wilkinson RJ, Sewell BT, Lessells R, Nekrutenko A, Greaney AJ, Starr TN, Bloom JD, Murrell B, Wilkinson E, Gupta RK, de Oliveira T, Kosakovsky Pond SL. Martin DP, et al. Among authors: boni mf. bioRxiv [Preprint]. 2022 Jan 18:2022.01.14.476382. doi: 10.1101/2022.01.14.476382. bioRxiv. 2022. Update in: Mol Biol Evol. 2022 Apr 11;39(4):msac061. doi: 10.1093/molbev/msac061 PMID: 35075456 Free PMC article. Updated. Preprint.
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin.
Welsh FC, Eguia RT, Lee JM, Haddox HK, Galloway J, Van Vinh Chau N, Loes AN, Huddleston J, Yu TC, Quynh Le M, Nhat NTD, Thi Le Thanh N, Greninger AL, Chu HY, Englund JA, Bedford T, Matsen FA 4th, Boni MF, Bloom JD. Welsh FC, et al. Among authors: boni mf. Cell Host Microbe. 2024 Aug 14;32(8):1397-1411.e11. doi: 10.1016/j.chom.2024.06.015. Epub 2024 Jul 19. Cell Host Microbe. 2024. PMID: 39032493 Free article.
Global risk of selection and spread of Plasmodium falciparum histidine-rich protein 2 and 3 gene deletions.
Watson OJ, Tran TN, Zupko RJ, Symons T, Thomson R, Visser T, Rumisha S, Dzianach PA, Hathaway N, Kim I, Juliano JJ, Bailey JA, Slater H, Okell L, Gething P, Ghani A, Boni MF, Parr JB, Cunningham J. Watson OJ, et al. Among authors: boni mf. medRxiv [Preprint]. 2024 Jan 1:2023.10.21.23297352. doi: 10.1101/2023.10.21.23297352. medRxiv. 2024. PMID: 37905102 Free PMC article. Preprint.
SARS-CoV-2 attack rate and population immunity in southern New England, March 2020 - May 2021.
Tran TN, Wikle NB, Yang F, Inam H, Leighow S, Gentilesco B, Chan P, Albert E, Strong ER, Pritchard JR, Hanage WP, Hanks EM, Crawford FW, Boni MF. Tran TN, et al. Among authors: boni mf. medRxiv [Preprint]. 2021 Dec 7:2021.12.06.21267375. doi: 10.1101/2021.12.06.21267375. medRxiv. 2021. Update in: JAMA Netw Open. 2022 May 2;5(5):e2214171. doi: 10.1001/jamanetworkopen.2022.14171 PMID: 34909789 Free PMC article. Updated. Preprint.
A combination of annual and nonannual forces drive respiratory disease in the tropics.
Yang F, Servadio JL, Le Thanh NT, Lam HM, Choisy M, Thai PQ, Nhu Thao TT, Thao Vy NH, Phuong HT, Nguyen TD, Hoai Tam DT, Hanks EM, Vinh H, Bjornstad ON, Van Vinh Chau N, Boni MF. Yang F, et al. Among authors: boni mf. medRxiv [Preprint]. 2023 Mar 29:2023.03.28.23287862. doi: 10.1101/2023.03.28.23287862. medRxiv. 2023. Update in: BMJ Glob Health. 2023 Nov;8(11):e013054. doi: 10.1136/bmjgh-2023-013054 PMID: 37034752 Free PMC article. Updated. Preprint.
SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics.
Wikle N, Tran TN, Gentilesco B, Leighow SM, Albert J, Strong ER, Břinda K, Inam H, Yang F, Hossain S, Chan P, Hanage WP, Messick M, Pritchard JR, Hanks EM, Boni MF. Wikle N, et al. Among authors: boni mf. medRxiv [Preprint]. 2021 Nov 6:2020.11.17.20232918. doi: 10.1101/2020.11.17.20232918. medRxiv. 2021. Update in: Sci Adv. 2022 Jan 28;8(4):eabf9868. doi: 10.1126/sciadv.abf9868 PMID: 34426816 Free PMC article. Updated. Preprint.
124 results