Banaei N - Search Results

1

Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults.

Siranosian BA, Brooks EF, Andermann T, Rezvani AR, Banaei N, Tang H, Bhatt AS. Siranosian BA, et al. Among authors: banaei n. Nat Commun. 2022 Jan 31;13(1):586. doi: 10.1038/s41467-022-28048-7. Nat Commun. 2022. PMID: 35102136 Free PMC article.

2

Precision identification of diverse bloodstream pathogens in the gut microbiome.

Tamburini FB, Andermann TM, Tkachenko E, Senchyna F, Banaei N, Bhatt AS. Tamburini FB, et al. Among authors: banaei n. Nat Med. 2018 Dec;24(12):1809-1814. doi: 10.1038/s41591-018-0202-8. Epub 2018 Oct 15. Nat Med. 2018. PMID: 30323331 Free PMC article.

3

Diversity of resistance mechanisms in carbapenem-resistant Enterobacteriaceae at a health care system in Northern California, from 2013 to 2016.

Senchyna F, Gaur RL, Sandlund J, Truong C, Tremintin G, Kültz D, Gomez CA, Tamburini FB, Andermann T, Bhatt A, Tickler I, Watz N, Budvytiene I, Shi G, Tenover FC, Banaei N. Senchyna F, et al. Among authors: banaei n. Diagn Microbiol Infect Dis. 2019 Mar;93(3):250-257. doi: 10.1016/j.diagmicrobio.2018.10.004. Epub 2018 Oct 13. Diagn Microbiol Infect Dis. 2019. PMID: 30482638 Free PMC article.

4

Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning.

Ho CS, Jean N, Hogan CA, Blackmon L, Jeffrey SS, Holodniy M, Banaei N, Saleh AAE, Ermon S, Dionne J. Ho CS, et al. Among authors: banaei n. Nat Commun. 2019 Oct 30;10(1):4927. doi: 10.1038/s41467-019-12898-9. Nat Commun. 2019. PMID: 31666527 Free PMC article.

5

Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.

Kang JB, Siranosian BA, Moss EL, Banaei N, Andermann TM, Bhatt AS. Kang JB, et al. Among authors: banaei n. BMC Bioinformatics. 2019 Dec 2;20(Suppl 16):585. doi: 10.1186/s12859-019-3073-1. BMC Bioinformatics. 2019. PMID: 31787070 Free PMC article.

6

Comparative genomics of Enterobacter cloacae complex before and after acquired clinical resistance to Ceftazidime-Avibactam.

Senchyna F, Tamburini FB, Murugesan K, Watz N, Bhatt AS, Banaei N. Senchyna F, et al. Among authors: banaei n. Diagn Microbiol Infect Dis. 2021 Dec;101(4):115511. doi: 10.1016/j.diagmicrobio.2021.115511. Epub 2021 Jul 31. Diagn Microbiol Infect Dis. 2021. PMID: 34418822

7

Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation.

Severyn CJ, Siranosian BA, Kong ST, Moreno A, Li MM, Chen N, Duncan CN, Margossian SP, Lehmann LE, Sun S, Andermann TM, Birbrayer O, Silverstein S, Reynolds CG, Kim S, Banaei N, Ritz J, Fodor AA, London WB, Bhatt AS, Whangbo JS. Severyn CJ, et al. Among authors: banaei n. JCI Insight. 2022 Apr 8;7(7):e154344. doi: 10.1172/jci.insight.154344. JCI Insight. 2022. PMID: 35239511 Free PMC article. Clinical Trial.

8

Near-fatal Legionella pneumonia in a neonate linked to home humidifier by metagenomic next generation sequencing.

West PT, Brooks EF, Costales C, Moreno A, Jensen TD, Budvytiene I, Khan A, Pham THM, Schwenk HT, Bhatt AS, Banaei N. West PT, et al. Among authors: banaei n. Med. 2022 Aug 12;3(8):565-567. doi: 10.1016/j.medj.2022.06.004. Epub 2022 Jul 20. Med. 2022. PMID: 35863347 Free PMC article. No abstract available.

9

Genome-wide tiled detection of circulating Mycobacterium tuberculosis cell-free DNA using Cas13.

Thakku SG, Lirette J, Murugesan K, Chen J, Theron G, Banaei N, Blainey PC, Gomez J, Wong SY, Hung DT. Thakku SG, et al. Among authors: banaei n. Nat Commun. 2023 Mar 31;14(1):1803. doi: 10.1038/s41467-023-37183-8. Nat Commun. 2023. PMID: 37002219 Free PMC article.

10

Clostridium difficile rates in asymptomatic and symptomatic hospitalized patients using nucleic acid testing.

Truong C, Schroeder LF, Gaur R, Anikst VE, Komo I, Watters C, McCalley E, Kulik C, Pickham D, Lee NJ, Banaei N. Truong C, et al. Among authors: banaei n. Diagn Microbiol Infect Dis. 2017 Apr;87(4):365-370. doi: 10.1016/j.diagmicrobio.2016.12.014. Epub 2017 Jan 3. Diagn Microbiol Infect Dis. 2017. PMID: 28087170

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