Ragan MA - Search Results

1

Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts.

Dougan KE, González-Pech RA, Stephens TG, Shah S, Chen Y, Ragan MA, Bhattacharya D, Chan CX. Dougan KE, et al. Among authors: ragan ma. Trends Microbiol. 2022 Sep;30(9):831-840. doi: 10.1016/j.tim.2022.02.001. Epub 2022 Feb 25. Trends Microbiol. 2022. PMID: 35227551 Review.

2

Genome Evolution of Coral Reef Symbionts as Intracellular Residents.

González-Pech RA, Bhattacharya D, Ragan MA, Chan CX. González-Pech RA, et al. Among authors: ragan ma. Trends Ecol Evol. 2019 Sep;34(9):799-806. doi: 10.1016/j.tree.2019.04.010. Epub 2019 May 10. Trends Ecol Evol. 2019. PMID: 31084944 Review.

3

Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium.

González-Pech RA, Stephens TG, Chen Y, Mohamed AR, Cheng Y, Shah S, Dougan KE, Fortuin MDA, Lagorce R, Burt DW, Bhattacharya D, Ragan MA, Chan CX. González-Pech RA, et al. Among authors: ragan ma. BMC Biol. 2021 Apr 13;19(1):73. doi: 10.1186/s12915-021-00994-6. BMC Biol. 2021. PMID: 33849527 Free PMC article.

4

Next-generation phylogenomics.

Chan CX, Ragan MA. Chan CX, et al. Among authors: ragan ma. Biol Direct. 2013 Jan 22;8:3. doi: 10.1186/1745-6150-8-3. Biol Direct. 2013. PMID: 23339707 Free PMC article.

5

Biological intuition in alignment-free methods: response to Posada.

Ragan MA, Chan CX. Ragan MA, et al. J Mol Evol. 2013 Aug;77(1-2):1-2. doi: 10.1007/s00239-013-9573-0. Epub 2013 Jul 23. J Mol Evol. 2013. PMID: 23877343

6

Molecular phylogenetics before sequences: oligonucleotide catalogs as k-mer spectra.

Ragan MA, Bernard G, Chan CX. Ragan MA, et al. RNA Biol. 2014;11(3):176-85. doi: 10.4161/rna.27505. Epub 2014 Jan 14. RNA Biol. 2014. PMID: 24572375 Free PMC article. Review.

7

Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer.

Bernard G, Chan CX, Ragan MA. Bernard G, et al. Among authors: ragan ma. Sci Rep. 2016 Jul 1;6:28970. doi: 10.1038/srep28970. Sci Rep. 2016. PMID: 27363362 Free PMC article.

8

Scaling Up the Phylogenetic Detection of Lateral Gene Transfer Events.

Chan CX, Beiko RG, Ragan MA. Chan CX, et al. Among authors: ragan ma. Methods Mol Biol. 2017;1525:421-432. doi: 10.1007/978-1-4939-6622-6_16. Methods Mol Biol. 2017. PMID: 27896730

9

Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium.

González-Pech RA, Ragan MA, Chan CX. González-Pech RA, et al. Among authors: ragan ma. Sci Rep. 2017 Nov 3;7(1):15021. doi: 10.1038/s41598-017-15029-w. Sci Rep. 2017. PMID: 29101370 Free PMC article.

10

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.

Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Aranda M, Bourne DG, Forêt S, Miller DJ, van Oppen MJH, Voolstra CR, Ragan MA, Chan CX. Liu H, et al. Among authors: ragan ma. Commun Biol. 2018 Jul 17;1:95. doi: 10.1038/s42003-018-0098-3. eCollection 2018. Commun Biol. 2018. PMID: 30271976 Free PMC article.

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