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From structure to function: approaches and limitations.
Thornton JM, Todd AE, Milburn D, Borkakoti N, Orengo CA. Thornton JM, et al. Among authors: borkakoti n. Nat Struct Biol. 2000 Nov;7 Suppl:991-4. doi: 10.1038/80784. Nat Struct Biol. 2000. PMID: 11104008 Review.
Analysis of catalytic residues in enzyme active sites.
Bartlett GJ, Porter CT, Borkakoti N, Thornton JM. Bartlett GJ, et al. Among authors: borkakoti n. J Mol Biol. 2002 Nov 15;324(1):105-21. doi: 10.1016/s0022-2836(02)01036-7. J Mol Biol. 2002. PMID: 12421562
Transform-MinER: transforming molecules in enzyme reactions.
Tyzack JD, Ribeiro AJM, Borkakoti N, Thornton JM. Tyzack JD, et al. Among authors: borkakoti n. Bioinformatics. 2018 Oct 15;34(20):3597-3599. doi: 10.1093/bioinformatics/bty394. Bioinformatics. 2018. PMID: 29762650 Free PMC article.
Finding enzyme cofactors in Protein Data Bank.
Mukhopadhyay A, Borkakoti N, Pravda L, Tyzack JD, Thornton JM, Velankar S. Mukhopadhyay A, et al. Among authors: borkakoti n. Bioinformatics. 2019 Sep 15;35(18):3510-3511. doi: 10.1093/bioinformatics/btz115. Bioinformatics. 2019. PMID: 30759194 Free PMC article.
Exploring Chemical Biosynthetic Design Space with Transform-MinER.
Tyzack JD, Ribeiro AJM, Borkakoti N, Thornton JM. Tyzack JD, et al. Among authors: borkakoti n. ACS Synth Biol. 2019 Nov 15;8(11):2494-2506. doi: 10.1021/acssynbio.9b00105. Epub 2019 Nov 5. ACS Synth Biol. 2019. PMID: 31647630 Free article.
42 results