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HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities.
Kalmar L, Gupta S, Kean IRL, Ba X, Hadjirin N, Lay EM, de Vries SPW, Bateman M, Bartlet H, Hernandez-Garcia J, Tucker AW, Restif O, Stevens MP, Wood JLN, Maskell DJ, Grant AJ, Holmes MA. Kalmar L, et al. PLoS Genet. 2022 Mar 14;18(3):e1009776. doi: 10.1371/journal.pgen.1009776. eCollection 2022 Mar. PLoS Genet. 2022. PMID: 35286304 Free PMC article.
Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals.
Boston RH, Guan R, Kalmar L, Beier S, Horner EC, Beristain-Covarrubias N, Yam-Puc JC, Pereyra Gerber P, Faria L, Kuroshchenkova A, Lindell AE, Blasche S, Correa-Noguera A, Elmer A, Saunders C, Bermperi A, Jose S, Kingston N; CITIID-NIHR COVID-19 BioResource Collaboration; Grigoriadou S, Staples E, Buckland MS, Lear S, Matheson NJ, Benes V, Parkinson C, Thaventhiran JE, Patil KR. Boston RH, et al. Among authors: kalmar l. Life Sci Alliance. 2024 Feb 5;7(4):e202302529. doi: 10.26508/lsa.202302529. Print 2024 Apr. Life Sci Alliance. 2024. PMID: 38316462 Free PMC article.
High-Throughput Mutagenesis Reveals a Role for Antimicrobial Resistance- and Virulence-Associated Mobile Genetic Elements in Staphylococcus aureus Host Adaptation.
Ba X, Matuszewska M, Kalmar L, Fan J, Zou G, Corander D, Raisen CL, Li S, Li L, Weinert LA, Tucker AW, Grant AJ, Zhou R, Holmes MA. Ba X, et al. Among authors: kalmar l. Microbiol Spectr. 2023 Feb 23;11(2):e0421322. doi: 10.1128/spectrum.04213-22. Online ahead of print. Microbiol Spectr. 2023. PMID: 36815781 Free PMC article.
The effects of antibiotic use on the dynamics of the microbiome and resistome in pigs.
Tams KW, Larsen I, Hansen JE, Spiegelhauer H, Strøm-Hansen AD, Rasmussen S, Ingham AC, Kalmar L, Kean IRL, Angen Ø, Holmes MA, Pedersen K, Jelsbak L, Folkesson A, Larsen AR, Strube ML. Tams KW, et al. Among authors: kalmar l. Anim Microbiome. 2023 Aug 21;5(1):39. doi: 10.1186/s42523-023-00258-4. Anim Microbiome. 2023. PMID: 37605221 Free PMC article.
118 results