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Page 1
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases.
Armstrong G, Martino C, Morris J, Khaleghi B, Kang J, DeReus J, Zhu Q, Roush D, McDonald D, Gonazlez A, Shaffer JP, Carpenter C, Estaki M, Wandro S, Eilert S, Akel A, Eno J, Curewitz K, Swafford AD, Moshiri N, Rosing T, Knight R. Armstrong G, et al. Among authors: wandro s. mSystems. 2022 Apr 26;7(2):e0137821. doi: 10.1128/msystems.01378-21. Epub 2022 Mar 16. mSystems. 2022. PMID: 35293792 Free PMC article.
Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References.
Hakim D, Wandro S, Zengler K, Zaramela LS, Nowinski B, Swafford A, Zhu Q, Song SJ, Gonzalez A, McDonald D, Knight R. Hakim D, et al. Among authors: wandro s. mSystems. 2022 Oct 26;7(5):e0075822. doi: 10.1128/msystems.00758-22. Epub 2022 Sep 8. mSystems. 2022. PMID: 36073806 Free PMC article.
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.
Shaffer JP, Marotz C, Belda-Ferre P, Martino C, Wandro S, Estaki M, Salido RA, Carpenter CS, Zaramela LS, Minich JJ, Bryant M, Sanders K, Fraraccio S, Ackermann G, Humphrey G, Swafford AD, Miller-Montgomery S, Knight R. Shaffer JP, et al. Among authors: wandro s. Biotechniques. 2021 Mar;70(3):149-159. doi: 10.2144/btn-2020-0153. Epub 2021 Jan 29. Biotechniques. 2021. PMID: 33512248 Free PMC article.
Microbiome analyses of blood and tissues suggest cancer diagnostic approach.
Poore GD, Kopylova E, Zhu Q, Carpenter C, Fraraccio S, Wandro S, Kosciolek T, Janssen S, Metcalf J, Song SJ, Kanbar J, Miller-Montgomery S, Heaton R, Mckay R, Patel SP, Swafford AD, Knight R. Poore GD, et al. Among authors: wandro s. Nature. 2020 Mar;579(7800):567-574. doi: 10.1038/s41586-020-2095-1. Epub 2020 Mar 11. Nature. 2020. Retraction in: Nature. 2024 Jul;631(8021):694. doi: 10.1038/s41586-024-07656-x PMID: 32214244 Free PMC article. Retracted.
Class Ib MHC-Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine.
Dasgupta S, Maricic I, Tang J, Wandro S, Weldon K, Carpenter CS, Eckmann L, Rivera-Nieves J, Sandborn W, Knight R, Dorrestein P, Swafford AD, Kumar V. Dasgupta S, et al. Among authors: wandro s. Immunohorizons. 2021 Dec 15;5(12):953-971. doi: 10.4049/immunohorizons.2100090. Immunohorizons. 2021. PMID: 34911745 Free PMC article.
Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions.
Narunsky-Haziza L, Sepich-Poore GD, Livyatan I, Asraf O, Martino C, Nejman D, Gavert N, Stajich JE, Amit G, González A, Wandro S, Perry G, Ariel R, Meltser A, Shaffer JP, Zhu Q, Balint-Lahat N, Barshack I, Dadiani M, Gal-Yam EN, Patel SP, Bashan A, Swafford AD, Pilpel Y, Knight R, Straussman R. Narunsky-Haziza L, et al. Among authors: wandro s. Cell. 2022 Sep 29;185(20):3789-3806.e17. doi: 10.1016/j.cell.2022.09.005. Cell. 2022. PMID: 36179670 Free PMC article.
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention.
Orchanian SB, Gauglitz JM, Wandro S, Weldon KC, Doty M, Stillwell K, Hansen S, Jiang L, Vargas F, Rhee KE, Lumeng JC, Dorrestein PC, Knight R, Kim JH, Song SJ, Swafford AD. Orchanian SB, et al. Among authors: wandro s. Adv Biol (Weinh). 2022 Aug;6(8):e2101313. doi: 10.1002/adbi.202101313. Epub 2022 Jun 1. Adv Biol (Weinh). 2022. PMID: 35652166 Free PMC article.
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.
Shaffer JP, Marotz C, Belda-Ferre P, Martino C, Wandro S, Estaki M, Salido RA, Carpenter CS, Zaramela LS, Minich JJ, Bryant M, Sanders K, Fraraccio S, Ackermann G, Humphrey G, Swafford AD, Miller-Montgomery S, Knight R. Shaffer JP, et al. Among authors: wandro s. bioRxiv [Preprint]. 2020 Nov 14:2020.11.13.370387. doi: 10.1101/2020.11.13.370387. bioRxiv. 2020. Update in: Biotechniques. 2021 Mar;70(3):149-159. doi: 10.2144/btn-2020-0153 PMID: 33200135 Free PMC article. Updated. Preprint.
Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity.
Martino C, Kellman BP, Sandoval DR, Clausen TM, Marotz CA, Song SJ, Wandro S, Zaramela LS, Salido Benítez RA, Zhu Q, Armingol E, Vázquez-Baeza Y, McDonald D, Sorrentino JT, Taylor B, Belda-Ferre P, Liang C, Zhang Y, Schifanella L, Klatt NR, Havulinna AS, Jousilahti P, Huang S, Haiminen N, Parida L, Kim HC, Swafford AD, Zengler K, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Esko JD, Lewis NE, Knight R. Martino C, et al. Among authors: wandro s. bioRxiv [Preprint]. 2020 Aug 18:2020.08.17.238444. doi: 10.1101/2020.08.17.238444. bioRxiv. 2020. PMID: 32839779 Free PMC article. Preprint.
22 results