Shah P - Search Results

1

Isolation, profiling, and tracking of extracellular vesicle cargo in Caenorhabditis elegans.

Nikonorova IA, Wang J, Cope AL, Tilton PE, Power KM, Walsh JD, Akella JS, Krauchunas AR, Shah P, Barr MM. Nikonorova IA, et al. Among authors: shah p. Curr Biol. 2022 May 9;32(9):1924-1936.e6. doi: 10.1016/j.cub.2022.03.005. Epub 2022 Mar 24. Curr Biol. 2022. PMID: 35334227 Free PMC article.

2

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli.

Skalenko KS, Li L, Zhang Y, Vvedenskaya IO, Winkelman JT, Cope AL, Taylor DM, Shah P, Ebright RH, Kinney JB, Zhang Y, Nickels BE. Skalenko KS, et al. Among authors: shah p. Proc Natl Acad Sci U S A. 2021 Jul 6;118(27):e2106388118. doi: 10.1073/pnas.2106388118. Proc Natl Acad Sci U S A. 2021. PMID: 34187896 Free PMC article.

3

Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling.

Cope AL, Vellappan S, Favate JS, Skalenko KS, Yadavalli SS, Shah P. Cope AL, et al. Among authors: shah p. Methods Mol Biol. 2022;2404:83-110. doi: 10.1007/978-1-0716-1851-6_5. Methods Mol Biol. 2022. PMID: 34694605

4

riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow.

Cope AL, Anderson F, Favate J, Jackson M, Mok A, Kurowska A, Liu J, MacKenzie E, Shivakumar V, Tilton P, Winterbourne SM, Xue S, Kavoussanakis K, Lareau LF, Shah P, Wallace EWJ. Cope AL, et al. Among authors: shah p. Bioinformatics. 2022 Apr 12;38(8):2358-2360. doi: 10.1093/bioinformatics/btac093. Bioinformatics. 2022. PMID: 35157051 Free PMC article.

5

Intragenomic variation in non-adaptive nucleotide biases causes underestimation of selection on synonymous codon usage.

Cope AL, Shah P. Cope AL, et al. Among authors: shah p. PLoS Genet. 2022 Jun 17;18(6):e1010256. doi: 10.1371/journal.pgen.1010256. eCollection 2022 Jun. PLoS Genet. 2022. PMID: 35714134 Free PMC article.

6

The landscape of transcriptional and translational changes over 22 years of bacterial adaptation.

Favate JS, Liang S, Cope AL, Yadavalli SS, Shah P. Favate JS, et al. Among authors: shah p. Elife. 2022 Oct 10;11:e81979. doi: 10.7554/eLife.81979. Elife. 2022. PMID: 36214449 Free PMC article.

7

The hypoxia response pathway promotes PEP carboxykinase and gluconeogenesis in C. elegans.

Vora M, Pyonteck SM, Popovitchenko T, Matlack TL, Prashar A, Kane NS, Favate J, Shah P, Rongo C. Vora M, et al. Among authors: shah p. Nat Commun. 2022 Oct 18;13(1):6168. doi: 10.1038/s41467-022-33849-x. Nat Commun. 2022. PMID: 36257965 Free PMC article.

8

NADcapPro and circNC: methods for accurate profiling of NAD and non-canonical RNA caps in eukaryotes.

Sharma S, Yang J, Favate J, Shah P, Kiledjian M. Sharma S, et al. Among authors: shah p. Commun Biol. 2023 Apr 13;6(1):406. doi: 10.1038/s42003-023-04774-6. Commun Biol. 2023. PMID: 37055518 Free PMC article.

9

riboviz: analysis and visualization of ribosome profiling datasets.

Carja O, Xing T, Wallace EWJ, Plotkin JB, Shah P. Carja O, et al. Among authors: shah p. BMC Bioinformatics. 2017 Oct 25;18(1):461. doi: 10.1186/s12859-017-1873-8. BMC Bioinformatics. 2017. PMID: 29070028 Free PMC article.

10

IMP1/IGF2BP1 in human colorectal cancer extracellular vesicles.

Kuhn M, Zhang Y, Favate J, Morita M, Blucher A, Das S, Liang S, Preet R, Parham LR, Williams KN, Molugu S, Armstrong RJ, Zhang W, Yang J, Hamilton KE, Dixon DA, Mills G, Morgan TK, Shah P, Andres SF. Kuhn M, et al. Among authors: shah p. Am J Physiol Gastrointest Liver Physiol. 2022 Dec 1;323(6):G571-G585. doi: 10.1152/ajpgi.00121.2022. Epub 2022 Oct 4. Am J Physiol Gastrointest Liver Physiol. 2022. PMID: 36194131 Free PMC article.

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