Campbell JD - Search Results

1

Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data.

Hong R, Koga Y, Bandyadka S, Leshchyk A, Wang Y, Akavoor V, Cao X, Sarfraz I, Wang Z, Alabdullatif S, Jansen F, Yajima M, Johnson WE, Campbell JD. Hong R, et al. Among authors: campbell jd. Nat Commun. 2022 Mar 30;13(1):1688. doi: 10.1038/s41467-022-29212-9. Nat Commun. 2022. PMID: 35354805 Free PMC article.

2

Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data.

Campbell JD, Liu G, Luo L, Xiao J, Gerrein J, Juan-Guardela B, Tedrow J, Alekseyev YO, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba F, Schwartz DA, Kaminski N, Johnson WE, Monti S, Spira A, Beane J, Lenburg ME. Campbell JD, et al. RNA. 2015 Feb;21(2):164-71. doi: 10.1261/rna.046060.114. Epub 2014 Dec 17. RNA. 2015. PMID: 25519487 Free PMC article.

3

scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data.

Wang Z, Hu J, Johnson WE, Campbell JD. Wang Z, et al. Among authors: campbell jd. BMC Bioinformatics. 2019 May 2;20(1):222. doi: 10.1186/s12859-019-2797-2. BMC Bioinformatics. 2019. PMID: 31046658 Free PMC article.

4

Pipeliner: A Nextflow-Based Framework for the Definition of Sequencing Data Processing Pipelines.

Federico A, Karagiannis T, Karri K, Kishore D, Koga Y, Campbell JD, Monti S. Federico A, et al. Among authors: campbell jd. Front Genet. 2019 Jun 28;10:614. doi: 10.3389/fgene.2019.00614. eCollection 2019. Front Genet. 2019. PMID: 31316552 Free PMC article.

5

Genomic and immune profiling of pre-invasive lung adenocarcinoma.

Chen H, Carrot-Zhang J, Zhao Y, Hu H, Freeman SS, Yu S, Ha G, Taylor AM, Berger AC, Westlake L, Zheng Y, Zhang J, Ramachandran A, Zheng Q, Pan Y, Zheng D, Zheng S, Cheng C, Kuang M, Zhou X, Zhang Y, Li H, Ye T, Ma Y, Gao Z, Tao X, Han H, Shang J, Yu Y, Bao D, Huang Y, Li X, Zhang Y, Xiang J, Sun Y, Li Y, Cherniack AD, Campbell JD, Shi L, Meyerson M. Chen H, et al. Among authors: campbell jd. Nat Commun. 2019 Nov 29;10(1):5472. doi: 10.1038/s41467-019-13460-3. Nat Commun. 2019. PMID: 31784532 Free PMC article.

6

Decontamination of ambient RNA in single-cell RNA-seq with DecontX.

Yang S, Corbett SE, Koga Y, Wang Z, Johnson WE, Yajima M, Campbell JD. Yang S, et al. Among authors: campbell jd. Genome Biol. 2020 Mar 5;21(1):57. doi: 10.1186/s13059-020-1950-6. Genome Biol. 2020. PMID: 32138770 Free PMC article.

7

Machine learning enables design automation of microfluidic flow-focusing droplet generation.

Lashkaripour A, Rodriguez C, Mehdipour N, Mardian R, McIntyre D, Ortiz L, Campbell J, Densmore D. Lashkaripour A, et al. Nat Commun. 2021 Jan 4;12(1):25. doi: 10.1038/s41467-020-20284-z. Nat Commun. 2021. PMID: 33397940 Free PMC article.

8

Whole-genome doubling confers unique genetic vulnerabilities on tumour cells.

Quinton RJ, DiDomizio A, Vittoria MA, Kotýnková K, Ticas CJ, Patel S, Koga Y, Vakhshoorzadeh J, Hermance N, Kuroda TS, Parulekar N, Taylor AM, Manning AL, Campbell JD, Ganem NJ. Quinton RJ, et al. Among authors: campbell jd. Nature. 2021 Feb;590(7846):492-497. doi: 10.1038/s41586-020-03133-3. Epub 2021 Jan 27. Nature. 2021. PMID: 33505027 Free PMC article.

9

ExperimentSubset: an R package to manage subsets of Bioconductor Experiment objects.

Sarfraz I, Asif M, Campbell JD. Sarfraz I, et al. Among authors: campbell jd. Bioinformatics. 2021 Sep 29;37(18):3058-3060. doi: 10.1093/bioinformatics/btab179. Bioinformatics. 2021. PMID: 33715007 Free PMC article.

10

Publisher Correction: Whole-genome doubling confers unique genetic vulnerabilities on tumour cells.

Quinton RJ, DiDomizio A, Vittoria MA, Kotýnková K, Ticas CJ, Patel S, Koga Y, Vakhshoorzadeh J, Hermance N, Kuroda TS, Parulekar N, Taylor AM, Manning AL, Campbell JD, Ganem NJ. Quinton RJ, et al. Among authors: campbell jd. Nature. 2021 May;593(7860):E15. doi: 10.1038/s41586-021-03591-3. Nature. 2021. PMID: 33976417 No abstract available.

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