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Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data.
Wang Y, Sarfraz I, Teh WK, Sokolov A, Herb BR, Creasy HH, Virshup I, Dries R, Degatano K, Mahurkar A, Schnell DJ, Madrigal P, Hilton J, Gehlenborg N, Tickle T, Campbell JD. Wang Y, et al. bioRxiv [Preprint]. 2023 Mar 7:2023.03.06.531314. doi: 10.1101/2023.03.06.531314. bioRxiv. 2023. Update in: Genome Biol. 2024 Aug 1;25(1):205. doi: 10.1186/s13059-024-03349-w. PMID: 36945543 Free PMC article. Updated. Preprint.
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data.
Sarfraz I, Wang Y, Shastry A, Teh WK, Sokolov A, Herb BR, Creasy HH, Virshup I, Dries R, Degatano K, Mahurkar A, Schnell DJ, Madrigal P, Hilton J, Gehlenborg N, Tickle T, Campbell JD. Sarfraz I, et al. Among authors: wang y. Genome Biol. 2024 Aug 1;25(1):205. doi: 10.1186/s13059-024-03349-w. Genome Biol. 2024. PMID: 39090672 Free PMC article.
Somatic mutation landscapes at single-molecule resolution.
Abascal F, Harvey LMR, Mitchell E, Lawson ARJ, Lensing SV, Ellis P, Russell AJC, Alcantara RE, Baez-Ortega A, Wang Y, Kwa EJ, Lee-Six H, Cagan A, Coorens THH, Chapman MS, Olafsson S, Leonard S, Jones D, Machado HE, Davies M, Øbro NF, Mahubani KT, Allinson K, Gerstung M, Saeb-Parsy K, Kent DG, Laurenti E, Stratton MR, Rahbari R, Campbell PJ, Osborne RJ, Martincorena I. Abascal F, et al. Among authors: wang y. Nature. 2021 May;593(7859):405-410. doi: 10.1038/s41586-021-03477-4. Epub 2021 Apr 28. Nature. 2021. PMID: 33911282 Free article.
APOBEC mutagenesis is a common process in normal human small intestine.
Wang Y, Robinson PS, Coorens THH, Moore L, Lee-Six H, Noorani A, Sanders MA, Jung H, Katainen R, Heuschkel R, Brunton-Sim R, Weston R, Read D, Nobbs B, Fitzgerald RC, Saeb-Parsy K, Martincorena I, Campbell PJ, Rushbrook S, Zilbauer M, Buczacki SJA, Stratton MR. Wang Y, et al. Nat Genet. 2023 Feb;55(2):246-254. doi: 10.1038/s41588-022-01296-5. Epub 2023 Jan 26. Nat Genet. 2023. PMID: 36702998 Free PMC article.
Patterns and Clinical Implications of Hemorrhagic Transformation After Thrombolysis in Acute Ischemic Stroke: Results From the ENCHANTED Study.
Wang Y, Maeda T, You S, Chen C, Liu L, Zhou Z, Robinson TG, Lindley RI, Delcourt C, Mair G, Wardlaw JM, Chalmers JP, Arima H, Huang Y, Kim JS, Lavados PM, Lee TH, Levi C, Parsons MW, Martins SC, Pandian JD, Pontes-Neto OM, Sharma VK, Nguyen TH, Wang J, Wu S, Liu M, Anderson CS, Chen X; ENCHANTED Investigators. Wang Y, et al. Neurology. 2024 Dec 10;103(11):e210020. doi: 10.1212/WNL.0000000000210020. Epub 2024 Nov 14. Neurology. 2024. PMID: 39541551 Clinical Trial.
High-temperature carbon dioxide capture in a porous material with terminal zinc hydride sites.
Rohde RC, Carsch KM, Dods MN, Jiang HZH, McIsaac AR, Klein RA, Kwon H, Karstens SL, Wang Y, Huang AJ, Taylor JW, Yabuuchi Y, Tkachenko NV, Meihaus KR, Furukawa H, Yahne DR, Engler KE, Bustillo KC, Minor AM, Reimer JA, Head-Gordon M, Brown CM, Long JR. Rohde RC, et al. Among authors: wang y. Science. 2024 Nov 15;386(6723):814-819. doi: 10.1126/science.adk5697. Epub 2024 Nov 14. Science. 2024. PMID: 39541444
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