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Page 1
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.
Zhu Q, Huang S, Gonzalez A, McGrath I, McDonald D, Haiminen N, Armstrong G, Vázquez-Baeza Y, Yu J, Kuczynski J, Sepich-Poore GD, Swafford AD, Das P, Shaffer JP, Lejzerowicz F, Belda-Ferre P, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Kim HC, Jain M, Inouye M, Gilbert JA, Knight R. Zhu Q, et al. Among authors: meric g. mSystems. 2022 Apr 26;7(2):e0016722. doi: 10.1128/msystems.00167-22. Epub 2022 Apr 4. mSystems. 2022. PMID: 35369727 Free PMC article.
Links between gut microbiome composition and fatty liver disease in a large population sample.
Ruuskanen MO, Åberg F, Männistö V, Havulinna AS, Méric G, Liu Y, Loomba R, Vázquez-Baeza Y, Tripathi A, Valsta LM, Inouye M, Jousilahti P, Salomaa V, Jain M, Knight R, Lahti L, Niiranen TJ. Ruuskanen MO, et al. Among authors: meric g. Gut Microbes. 2021 Jan-Dec;13(1):1-22. doi: 10.1080/19490976.2021.1888673. Gut Microbes. 2021. PMID: 33651661 Free PMC article.
Taxonomic signatures of cause-specific mortality risk in human gut microbiome.
Salosensaari A, Laitinen V, Havulinna AS, Meric G, Cheng S, Perola M, Valsta L, Alfthan G, Inouye M, Watrous JD, Long T, Salido RA, Sanders K, Brennan C, Humphrey GC, Sanders JG, Jain M, Jousilahti P, Salomaa V, Knight R, Lahti L, Niiranen T. Salosensaari A, et al. Among authors: meric g. Nat Commun. 2021 May 11;12(1):2671. doi: 10.1038/s41467-021-22962-y. Nat Commun. 2021. PMID: 33976176 Free PMC article.
Associations of healthy food choices with gut microbiota profiles.
Koponen KK, Salosensaari A, Ruuskanen MO, Havulinna AS, Männistö S, Jousilahti P, Palmu J, Salido R, Sanders K, Brennan C, Humphrey GC, Sanders JG, Meric G, Cheng S, Inouye M, Jain M, Niiranen TJ, Valsta LM, Knight R, Salomaa VV. Koponen KK, et al. Among authors: meric g. Am J Clin Nutr. 2021 Aug 2;114(2):605-616. doi: 10.1093/ajcn/nqab077. Am J Clin Nutr. 2021. PMID: 34020448 Free PMC article.
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes.
Armstrong G, Cantrell K, Huang S, McDonald D, Haiminen N, Carrieri AP, Zhu Q, Gonzalez A, McGrath I, Beck KL, Hakim D, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Jain M, Inouye M, Swafford AD, Kim HC, Parida L, Vázquez-Baeza Y, Knight R. Armstrong G, et al. Among authors: meric g. Genome Res. 2021 Nov;31(11):2131-2137. doi: 10.1101/gr.275777.121. Epub 2021 Sep 3. Genome Res. 2021. PMID: 34479875 Free PMC article.
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.
Qin Y, Havulinna AS, Liu Y, Jousilahti P, Ritchie SC, Tokolyi A, Sanders JG, Valsta L, Brożyńska M, Zhu Q, Tripathi A, Vázquez-Baeza Y, Loomba R, Cheng S, Jain M, Niiranen T, Lahti L, Knight R, Salomaa V, Inouye M, Méric G. Qin Y, et al. Among authors: meric g. Nat Genet. 2022 Feb;54(2):134-142. doi: 10.1038/s41588-021-00991-z. Epub 2022 Feb 3. Nat Genet. 2022. PMID: 35115689 Free PMC article.
The Carbon Footprint of Bioinformatics.
Grealey J, Lannelongue L, Saw WY, Marten J, Méric G, Ruiz-Carmona S, Inouye M. Grealey J, et al. Among authors: meric g. Mol Biol Evol. 2022 Mar 2;39(3):msac034. doi: 10.1093/molbev/msac034. Mol Biol Evol. 2022. PMID: 35143670 Free PMC article.
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting.
Liu Y, Méric G, Havulinna AS, Teo SM, Åberg F, Ruuskanen M, Sanders J, Zhu Q, Tripathi A, Verspoor K, Cheng S, Jain M, Jousilahti P, Vázquez-Baeza Y, Loomba R, Lahti L, Niiranen T, Salomaa V, Knight R, Inouye M. Liu Y, et al. Among authors: meric g. Cell Metab. 2022 May 3;34(5):719-730.e4. doi: 10.1016/j.cmet.2022.03.002. Epub 2022 Mar 29. Cell Metab. 2022. PMID: 35354069 Free PMC article.
Role of Gut Microbiota in Statin-Associated New-Onset Diabetes-A Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort.
Koponen K, Kambur O, Joseph B, Ruuskanen MO, Jousilahti P, Salido R, Brennan C, Jain M, Meric G, Inouye M, Lahti L, Niiranen T, Havulinna AS, Knight R, Salomaa V. Koponen K, et al. Among authors: meric g. Arterioscler Thromb Vasc Biol. 2024 Feb;44(2):477-487. doi: 10.1161/ATVBAHA.123.319458. Epub 2023 Nov 16. Arterioscler Thromb Vasc Biol. 2024. PMID: 37970720 Free PMC article.
130 results