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Page 1
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.
Zhu Q, Huang S, Gonzalez A, McGrath I, McDonald D, Haiminen N, Armstrong G, Vázquez-Baeza Y, Yu J, Kuczynski J, Sepich-Poore GD, Swafford AD, Das P, Shaffer JP, Lejzerowicz F, Belda-Ferre P, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Kim HC, Jain M, Inouye M, Gilbert JA, Knight R. Zhu Q, et al. mSystems. 2022 Apr 26;7(2):e0016722. doi: 10.1128/msystems.00167-22. Epub 2022 Apr 4. mSystems. 2022. PMID: 35369727 Free PMC article.
The microbiome and human cancer.
Sepich-Poore GD, Zitvogel L, Straussman R, Hasty J, Wargo JA, Knight R. Sepich-Poore GD, et al. Science. 2021 Mar 26;371(6536):eabc4552. doi: 10.1126/science.abc4552. Science. 2021. PMID: 33766858 Free PMC article. Review.
The microbiome and prostate cancer.
Javier-DesLoges J, McKay RR, Swafford AD, Sepich-Poore GD, Knight R, Parsons JK. Javier-DesLoges J, et al. Prostate Cancer Prostatic Dis. 2022 Feb;25(2):159-164. doi: 10.1038/s41391-021-00413-5. Epub 2021 Jul 15. Prostate Cancer Prostatic Dis. 2022. PMID: 34267333 Free PMC article. Review.
Redrawing therapeutic boundaries: microbiota and cancer.
Sholl J, Sepich-Poore GD, Knight R, Pradeu T. Sholl J, et al. Trends Cancer. 2022 Feb;8(2):87-97. doi: 10.1016/j.trecan.2021.10.008. Epub 2021 Nov 26. Trends Cancer. 2022. PMID: 34844910 Free PMC article. Review.
Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution.
Sepich-Poore GD, Guccione C, Laplane L, Pradeu T, Curtius K, Knight R. Sepich-Poore GD, et al. Bioessays. 2022 May;44(5):e2100252. doi: 10.1002/bies.202100252. Epub 2022 Mar 6. Bioessays. 2022. PMID: 35253252 Free PMC article. Review.
Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions.
Narunsky-Haziza L, Sepich-Poore GD, Livyatan I, Asraf O, Martino C, Nejman D, Gavert N, Stajich JE, Amit G, González A, Wandro S, Perry G, Ariel R, Meltser A, Shaffer JP, Zhu Q, Balint-Lahat N, Barshack I, Dadiani M, Gal-Yam EN, Patel SP, Bashan A, Swafford AD, Pilpel Y, Knight R, Straussman R. Narunsky-Haziza L, et al. Among authors: sepich poore gd. Cell. 2022 Sep 29;185(20):3789-3806.e17. doi: 10.1016/j.cell.2022.09.005. Cell. 2022. PMID: 36179670 Free PMC article.
Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis.
Brewer RC, Lanz TV, Hale CR, Sepich-Poore GD, Martino C, Swafford AD, Carroll TS, Kongpachith S, Blum LK, Elliott SE, Blachere NE, Parveen S, Fak J, Yao V, Troyanskaya O, Frank MO, Bloom MS, Jahanbani S, Gomez AM, Iyer R, Ramadoss NS, Sharpe O, Chandrasekaran S, Kelmenson LB, Wang Q, Wong H, Torres HL, Wiesen M, Graves DT, Deane KD, Holers VM, Knight R, Darnell RB, Robinson WH, Orange DE. Brewer RC, et al. Among authors: sepich poore gd. Sci Transl Med. 2023 Feb 22;15(684):eabq8476. doi: 10.1126/scitranslmed.abq8476. Epub 2023 Feb 22. Sci Transl Med. 2023. PMID: 36812347 Free PMC article.
Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome.
Taylor BC, Sheikh Andalibi M, Wandro S, Weldon KC, Sepich-Poore GD, Carpenter CS, Fraraccio S, Franklin D, Iudicello JE, Letendre S, Gianella S, Grant I, Ellis RJ, Heaton RK, Knight R, Swafford AD. Taylor BC, et al. Among authors: sepich poore gd. Microorganisms. 2023 Apr 14;11(4):1022. doi: 10.3390/microorganisms11041022. Microorganisms. 2023. PMID: 37110445 Free PMC article.
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