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Unlocking capacities of genomics for the COVID-19 response and future pandemics.
Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. Knyazev S, et al. Among authors: crandall ka. Nat Methods. 2022 Apr;19(4):374-380. doi: 10.1038/s41592-022-01444-z. Nat Methods. 2022. PMID: 35396471 Free PMC article.
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.
Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, Lam TT, Suchard MA, Abecasis A, Wilkinson E, de Oliveira T, Bento AI, Schmidt HA, Martin D, Hadfield J, Faria N, Grubaugh ND, Neher RA, Baele G, Lemey P, Stadler T, Albert J, Crandall KA, Leitner T, Stamatakis A, Prosperi M, Salemi M. Mavian C, et al. Among authors: crandall ka. Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12522-12523. doi: 10.1073/pnas.2007295117. Epub 2020 May 7. Proc Natl Acad Sci U S A. 2020. PMID: 32381734 Free PMC article. No abstract available.
Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative.
Bennett TD, Moffitt RA, Hajagos JG, Amor B, Anand A, Bissell MM, Bradwell KR, Bremer C, Byrd JB, Denham A, DeWitt PE, Gabriel D, Garibaldi BT, Girvin AT, Guinney J, Hill EL, Hong SS, Jimenez H, Kavuluru R, Kostka K, Lehmann HP, Levitt E, Mallipattu SK, Manna A, McMurry JA, Morris M, Muschelli J, Neumann AJ, Palchuk MB, Pfaff ER, Qian Z, Qureshi N, Russell S, Spratt H, Walden A, Williams AE, Wooldridge JT, Yoo YJ, Zhang XT, Zhu RL, Austin CP, Saltz JH, Gersing KR, Haendel MA, Chute CG; National COVID Cohort Collaborative (N3C) Consortium. Bennett TD, et al. JAMA Netw Open. 2021 Jul 1;4(7):e2116901. doi: 10.1001/jamanetworkopen.2021.16901. JAMA Netw Open. 2021. PMID: 34255046 Free PMC article.
One-quarter of freshwater fauna threatened with extinction.
Sayer CA, Fernando E, Jimenez RR, Macfarlane NBW, Rapacciuolo G, Böhm M, Brooks TM, Contreras-MacBeath T, Cox NA, Harrison I, Hoffmann M, Jenkins R, Smith KG, Vié JC, Abbott JC, Allen DJ, Allen GR, Barrios V, Boudot JP, Carrizo SF, Charvet P, Clausnitzer V, Congiu L, Crandall KA, Cumberlidge N, Cuttelod A, Dalton J, Daniels AG, De Grave S, De Knijf G, Dijkstra KB, Dow RA, Freyhof J, García N, Gessner J, Getahun A, Gibson C, Gollock MJ, Grant MI, Groom AER, Hammer MP, Hammerson GA, Hilton-Taylor C, Hodgkinson L, Holland RA, Jabado RW, Juffe Bignoli D, Kalkman VJ, Karimov BK, Kipping J, Kottelat M, Lalèyè PA, Larson HK, Lintermans M, Lozano F, Ludwig A, Lyons TJ, Máiz-Tomé L, Molur S, Ng HH, Numa C, Palmer-Newton AF, Pike C, Pippard HE, Polaz CNM, Pollock CM, Raghavan R, Rand PS, Ravelomanana T, Reis RE, Rigby CL, Scott JA, Skelton PH, Sloat MR, Snoeks J, Stiassny MLJ, Tan HH, Taniguchi Y, Thorstad EB, Tognelli MF, Torres AG, Torres Y, Tweddle D, Watanabe K, Westrip JRS, Wright EGE, Zhang E, Darwall WRT. Sayer CA, et al. Among authors: crandall ka. Nature. 2025 Jan 8. doi: 10.1038/s41586-024-08375-z. Online ahead of print. Nature. 2025. PMID: 39779863
Associations between HIV infection and clinical spectrum of COVID-19: a population level analysis based on US National COVID Cohort Collaborative (N3C) data.
Yang X, Sun J, Patel RC, Zhang J, Guo S, Zheng Q, Olex AL, Olatosi B, Weissman SB, Islam JY, Chute CG, Haendel M, Kirk GD, Li X; National COVID Cohort Collaborative Consortium. Yang X, et al. Lancet HIV. 2021 Nov;8(11):e690-e700. doi: 10.1016/S2352-3018(21)00239-3. Epub 2021 Oct 13. Lancet HIV. 2021. PMID: 34655550 Free PMC article.
Epidemiological associations with genomic variation in SARS-CoV-2.
Rahnavard A, Dawson T, Clement R, Stearrett N, Pérez-Losada M, Crandall KA. Rahnavard A, et al. Among authors: crandall ka. Sci Rep. 2021 Nov 26;11(1):23023. doi: 10.1038/s41598-021-02548-w. Sci Rep. 2021. PMID: 34837008 Free PMC article.
The Earth BioGenome Project 2020: Starting the clock.
Lewin HA, Richards S, Lieberman Aiden E, Allende ML, Archibald JM, Bálint M, Barker KB, Baumgartner B, Belov K, Bertorelle G, Blaxter ML, Cai J, Caperello ND, Carlson K, Castilla-Rubio JC, Chaw SM, Chen L, Childers AK, Coddington JA, Conde DA, Corominas M, Crandall KA, Crawford AJ, DiPalma F, Durbin R, Ebenezer TE, Edwards SV, Fedrigo O, Flicek P, Formenti G, Gibbs RA, Gilbert MTP, Goldstein MM, Graves JM, Greely HT, Grigoriev IV, Hackett KJ, Hall N, Haussler D, Helgen KM, Hogg CJ, Isobe S, Jakobsen KS, Janke A, Jarvis ED, Johnson WE, Jones SJM, Karlsson EK, Kersey PJ, Kim JH, Kress WJ, Kuraku S, Lawniczak MKN, Leebens-Mack JH, Li X, Lindblad-Toh K, Liu X, Lopez JV, Marques-Bonet T, Mazard S, Mazet JAK, Mazzoni CJ, Myers EW, O'Neill RJ, Paez S, Park H, Robinson GE, Roquet C, Ryder OA, Sabir JSM, Shaffer HB, Shank TM, Sherkow JS, Soltis PS, Tang B, Tedersoo L, Uliano-Silva M, Wang K, Wei X, Wetzer R, Wilson JL, Xu X, Yang H, Yoder AD, Zhang G. Lewin HA, et al. Among authors: crandall ka. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2115635118. doi: 10.1073/pnas.2115635118. Proc Natl Acad Sci U S A. 2022. PMID: 35042800 Free PMC article. No abstract available.
255 results