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LoopGrafter: a web tool for transplanting dynamical loops for protein engineering.
Planas-Iglesias J, Opaleny F, Ulbrich P, Stourac J, Sanusi Z, Pinto GP, Schenkmayerova A, Byska J, Damborsky J, Kozlikova B, Bednar D. Planas-Iglesias J, et al. Among authors: byska j. Nucleic Acids Res. 2022 Jul 5;50(W1):W465-W473. doi: 10.1093/nar/gkac249. Nucleic Acids Res. 2022. PMID: 35438789 Free PMC article.
Comparative visualization of protein secondary structures.
Kocincová L, Jarešová M, Byška J, Parulek J, Hauser H, Kozlíková B. Kocincová L, et al. Among authors: byska j. BMC Bioinformatics. 2017 Feb 15;18(Suppl 2):23. doi: 10.1186/s12859-016-1449-z. BMC Bioinformatics. 2017. PMID: 28251875 Free PMC article.
Interactive exploration of ligand transportation through protein tunnels.
Furmanová K, Jarešová M, Byška J, Jurčík A, Parulek J, Hauser H, Kozlíková B. Furmanová K, et al. Among authors: byska j. BMC Bioinformatics. 2017 Feb 15;18(Suppl 2):22. doi: 10.1186/s12859-016-1448-0. BMC Bioinformatics. 2017. PMID: 28251878 Free PMC article.
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.
Jurcik A, Bednar D, Byska J, Marques SM, Furmanova K, Daniel L, Kokkonen P, Brezovsky J, Strnad O, Stourac J, Pavelka A, Manak M, Damborsky J, Kozlikova B. Jurcik A, et al. Among authors: byska j. Bioinformatics. 2018 Oct 15;34(20):3586-3588. doi: 10.1093/bioinformatics/bty386. Bioinformatics. 2018. PMID: 29741570 Free PMC article.
LoopGrafter: Visual Support for the Grafting Workflow of Protein Loops.
Opaleny F, Ulbrich P, Planas-Iglesias J, Byska J, Pinto GP, Bednar D, FurmanovA K, KozlikovA B. Opaleny F, et al. Among authors: byska j. IEEE Trans Vis Comput Graph. 2021 Sep 29;PP. doi: 10.1109/TVCG.2021.3114755. Online ahead of print. IEEE Trans Vis Comput Graph. 2021. PMID: 34587016
17 results