Grimes SM - Search Results

1

KmerKeys: a web resource for searching indexed genome assemblies and variants.

Pavlichin DS, Lee H, Greer SU, Grimes SM, Weissman T, Ji HP. Pavlichin DS, et al. Among authors: grimes sm. Nucleic Acids Res. 2022 Jul 5;50(W1):W448-W453. doi: 10.1093/nar/gkac266. Nucleic Acids Res. 2022. PMID: 35474383 Free PMC article.

2

A flexible approach for highly multiplexed candidate gene targeted resequencing.

Natsoulis G, Bell JM, Xu H, Buenrostro JD, Ordonez H, Grimes S, Newburger D, Jensen M, Zahn JM, Zhang N, Ji HP. Natsoulis G, et al. PLoS One. 2011;6(6):e21088. doi: 10.1371/journal.pone.0021088. Epub 2011 Jun 30. PLoS One. 2011. PMID: 21738606 Free PMC article.

3

The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome.

Newburger DE, Natsoulis G, Grimes S, Bell JM, Davis RW, Batzoglou S, Ji HP. Newburger DE, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D1137-43. doi: 10.1093/nar/gkr973. Epub 2011 Nov 18. Nucleic Acids Res. 2012. PMID: 22102592 Free PMC article.

4

A programmable method for massively parallel targeted sequencing.

Hopmans ES, Natsoulis G, Bell JM, Grimes SM, Sieh W, Ji HP. Hopmans ES, et al. Among authors: grimes sm. Nucleic Acids Res. 2014 Jun;42(10):e88. doi: 10.1093/nar/gku282. Epub 2014 Apr 29. Nucleic Acids Res. 2014. PMID: 24782526 Free PMC article.

5

MendeLIMS: a web-based laboratory information management system for clinical genome sequencing.

Grimes SM, Ji HP. Grimes SM, et al. BMC Bioinformatics. 2014 Aug 27;15(1):290. doi: 10.1186/1471-2105-15-290. BMC Bioinformatics. 2014. PMID: 25159034 Free PMC article.

6

The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical-genomic driver associations.

Lee H, Palm J, Grimes SM, Ji HP. Lee H, et al. Among authors: grimes sm. Genome Med. 2015 Oct 27;7:112. doi: 10.1186/s13073-015-0226-3. Genome Med. 2015. PMID: 26507825 Free PMC article.

7

Emergence of Hemagglutinin Mutations During the Course of Influenza Infection.

Cushing A, Kamali A, Winters M, Hopmans ES, Bell JM, Grimes SM, Xia LC, Zhang NR, Moss RB, Holodniy M, Ji HP. Cushing A, et al. Among authors: grimes sm. Sci Rep. 2015 Nov 5;5:16178. doi: 10.1038/srep16178. Sci Rep. 2015. PMID: 26538451 Free PMC article. Clinical Trial.

8

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.

Zheng GX, Lau BT, Schnall-Levin M, Jarosz M, Bell JM, Hindson CM, Kyriazopoulou-Panagiotopoulou S, Masquelier DA, Merrill L, Terry JM, Mudivarti PA, Wyatt PW, Bharadwaj R, Makarewicz AJ, Li Y, Belgrader P, Price AD, Lowe AJ, Marks P, Vurens GM, Hardenbol P, Montesclaros L, Luo M, Greenfield L, Wong A, Birch DE, Short SW, Bjornson KP, Patel P, Hopmans ES, Wood C, Kaur S, Lockwood GK, Stafford D, Delaney JP, Wu I, Ordonez HS, Grimes SM, Greer S, Lee JY, Belhocine K, Giorda KM, Heaton WH, McDermott GP, Bent ZW, Meschi F, Kondov NO, Wilson R, Bernate JA, Gauby S, Kindwall A, Bermejo C, Fehr AN, Chan A, Saxonov S, Ness KD, Hindson BJ, Ji HP. Zheng GX, et al. Among authors: grimes sm. Nat Biotechnol. 2016 Mar;34(3):303-11. doi: 10.1038/nbt.3432. Epub 2016 Feb 1. Nat Biotechnol. 2016. PMID: 26829319 Free PMC article.

9

A genome-wide approach for detecting novel insertion-deletion variants of mid-range size.

Xia LC, Sakshuwong S, Hopmans ES, Bell JM, Grimes SM, Siegmund DO, Ji HP, Zhang NR. Xia LC, et al. Among authors: grimes sm. Nucleic Acids Res. 2016 Sep 6;44(15):e126. doi: 10.1093/nar/gkw481. Epub 2016 Jun 20. Nucleic Acids Res. 2016. PMID: 27325742 Free PMC article.

10

CRISPR-Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis.

Shin G, Grimes SM, Lee H, Lau BT, Xia LC, Ji HP. Shin G, et al. Among authors: grimes sm. Nat Commun. 2017 Feb 7;8:14291. doi: 10.1038/ncomms14291. Nat Commun. 2017. PMID: 28169275 Free PMC article.

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