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Increased Abundance of Achromobacter xylosoxidans and Bacillus cereus in Upper Airway Transcriptionally Active Microbiome of COVID-19 Mortality Patients Indicates Role of Co-Infections in Disease Severity and Outcome.
Devi P, Maurya R, Mehta P, Shamim U, Yadav A, Chattopadhyay P, Kanakan A, Khare K, Vasudevan JS, Sahni S, Mishra P, Tyagi A, Jha S, Budhiraja S, Tarai B, Pandey R. Devi P, et al. Among authors: chattopadhyay p. Microbiol Spectr. 2022 Jun 29;10(3):e0231121. doi: 10.1128/spectrum.02311-21. Epub 2022 May 17. Microbiol Spectr. 2022. PMID: 35579429 Free PMC article.
Respiratory Co-Infections: Modulators of SARS-CoV-2 Patients' Clinical Sub-Phenotype.
Mehta P, Sahni S, Siddiqui S, Mishra N, Sharma P, Sharma S, Tyagi A, Chattopadhyay P, Vivekanand A, Devi P, Khan A, Waghdhare S, Budhiraja S, Uppili B, Maurya R, Nangia V, Shamim U, Hazarika PP, Wadhwa S, Tyagi N, Dewan A, Tarai B, Das P, Faruq M, Agrawal A, Jha S, Pandey R. Mehta P, et al. Among authors: chattopadhyay p. Front Microbiol. 2021 May 28;12:653399. doi: 10.3389/fmicb.2021.653399. eCollection 2021. Front Microbiol. 2021. PMID: 34122366 Free PMC article.
Infection outcome needs two to tango: human host and the pathogen.
Maurya R, Kanakan A, Vasudevan JS, Chattopadhyay P, Pandey R. Maurya R, et al. Among authors: chattopadhyay p. Brief Funct Genomics. 2022 Apr 11;21(2):90-102. doi: 10.1093/bfgp/elab037. Brief Funct Genomics. 2022. PMID: 34402498 Free PMC article. Review.
SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion.
Mlcochova P, Kemp SA, Dhar MS, Papa G, Meng B, Ferreira IATM, Datir R, Collier DA, Albecka A, Singh S, Pandey R, Brown J, Zhou J, Goonawardane N, Mishra S, Whittaker C, Mellan T, Marwal R, Datta M, Sengupta S, Ponnusamy K, Radhakrishnan VS, Abdullahi A, Charles O, Chattopadhyay P, Devi P, Caputo D, Peacock T, Wattal C, Goel N, Satwik A, Vaishya R, Agarwal M; Indian SARS-CoV-2 Genomics Consortium (INSACOG); Genotype to Phenotype Japan (G2P-Japan) Consortium; CITIID-NIHR BioResource COVID-19 Collaboration; Mavousian A, Lee JH, Bassi J, Silacci-Fegni C, Saliba C, Pinto D, Irie T, Yoshida I, Hamilton WL, Sato K, Bhatt S, Flaxman S, James LC, Corti D, Piccoli L, Barclay WS, Rakshit P, Agrawal A, Gupta RK. Mlcochova P, et al. Among authors: chattopadhyay p. Nature. 2021 Nov;599(7883):114-119. doi: 10.1038/s41586-021-03944-y. Epub 2021 Sep 6. Nature. 2021. PMID: 34488225 Free PMC article.
Clinico-Genomic Analysis Reveals Mutations Associated with COVID-19 Disease Severity: Possible Modulation by RNA Structure.
Mehta P, Alle S, Chaturvedi A, Swaminathan A, Saifi S, Maurya R, Chattopadhyay P, Devi P, Chauhan R, Kanakan A, Vasudevan JS, Sethuraman R, Chidambaram S, Srivastava M, Chakravarthi A, Jacob J, Namagiri M, Konala V, Jha S, Priyakumar UD, Vinod PK, Pandey R. Mehta P, et al. Among authors: chattopadhyay p. Pathogens. 2021 Aug 31;10(9):1109. doi: 10.3390/pathogens10091109. Pathogens. 2021. PMID: 34578142 Free PMC article.
Plasma Gradient of Soluble Urokinase-Type Plasminogen Activator Receptor Is Linked to Pathogenic Plasma Proteome and Immune Transcriptome and Stratifies Outcomes in Severe COVID-19.
Sarif J, Raychaudhuri D, D'Rozario R, Bandopadhyay P, Singh P, Mehta P, Hoque MA, Sinha BP, Kushwaha M, Sahni S, Devi P, Chattopadhyay P, Paul SR, Ray Y, Chaudhuri K, Banerjee S, Majumdar D, Saha B, Sarkar BS, Bhattacharya P, Chatterjee S, Paul S, Ghosh P, Pandey R, Sengupta S, Ganguly D. Sarif J, et al. Among authors: chattopadhyay p. Front Immunol. 2021 Oct 28;12:738093. doi: 10.3389/fimmu.2021.738093. eCollection 2021. Front Immunol. 2021. PMID: 34777349 Free PMC article.
Learning From Biological and Computational Machines: Importance of SARS-CoV-2 Genomic Surveillance, Mutations and Risk Stratification.
Bhat S, Pandey A, Kanakan A, Maurya R, Vasudevan JS, Devi P, Chattopadhyay P, Sharma S, Khyalappa RJ, Joshi MG, Pandey R. Bhat S, et al. Among authors: chattopadhyay p. Front Cell Infect Microbiol. 2021 Dec 24;11:783961. doi: 10.3389/fcimb.2021.783961. eCollection 2021. Front Cell Infect Microbiol. 2021. PMID: 35047415 Free PMC article.
587 results