Arnold CD - Search Results

1

Differential cofactor dependencies define distinct types of human enhancers.

Neumayr C, Haberle V, Serebreni L, Karner K, Hendy O, Boija A, Henninger JE, Li CH, Stejskal K, Lin G, Bergauer K, Pagani M, Rath M, Mechtler K, Arnold CD, Stark A. Neumayr C, et al. Among authors: arnold cd. Nature. 2022 Jun;606(7913):406-413. doi: 10.1038/s41586-022-04779-x. Epub 2022 Jun 1. Nature. 2022. PMID: 35650434 Free PMC article.

2

Genome-wide quantitative enhancer activity maps identified by STARR-seq.

Arnold CD, Gerlach D, Stelzer C, Boryń ŁM, Rath M, Stark A. Arnold CD, et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science.1232542. Epub 2013 Jan 17. Science. 2013. PMID: 23328393

3

Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin.

Shlyueva D, Stelzer C, Gerlach D, Yáñez-Cuna JO, Rath M, Boryń ŁM, Arnold CD, Stark A. Shlyueva D, et al. Among authors: arnold cd. Mol Cell. 2014 Apr 10;54(1):180-192. doi: 10.1016/j.molcel.2014.02.026. Epub 2014 Mar 27. Mol Cell. 2014. PMID: 24685159 Free article.

4

Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.

Yáñez-Cuna JO, Arnold CD, Stampfel G, Boryń LM, Gerlach D, Rath M, Stark A. Yáñez-Cuna JO, et al. Among authors: arnold cd. Genome Res. 2014 Jul;24(7):1147-56. doi: 10.1101/gr.169243.113. Epub 2014 Apr 8. Genome Res. 2014. PMID: 24714811 Free PMC article.

5

Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution.

Arnold CD, Gerlach D, Spies D, Matts JA, Sytnikova YA, Pagani M, Lau NC, Stark A. Arnold CD, et al. Nat Genet. 2014 Jul;46(7):685-92. doi: 10.1038/ng.3009. Epub 2014 Jun 8. Nat Genet. 2014. PMID: 24908250 Free PMC article.

6

Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

Zabidi MA, Arnold CD, Schernhuber K, Pagani M, Rath M, Frank O, Stark A. Zabidi MA, et al. Among authors: arnold cd. Nature. 2015 Feb 26;518(7540):556-9. doi: 10.1038/nature13994. Epub 2014 Dec 15. Nature. 2015. PMID: 25517091 Free PMC article.

7

Genome-wide assessment of sequence-intrinsic enhancer responsiveness at single-base-pair resolution.

Arnold CD, Zabidi MA, Pagani M, Rath M, Schernhuber K, Kazmar T, Stark A. Arnold CD, et al. Nat Biotechnol. 2017 Feb;35(2):136-144. doi: 10.1038/nbt.3739. Epub 2016 Dec 26. Nat Biotechnol. 2017. PMID: 28024147 Free PMC article.

8

Resolving systematic errors in widely used enhancer activity assays in human cells.

Muerdter F, Boryń ŁM, Woodfin AR, Neumayr C, Rath M, Zabidi MA, Pagani M, Haberle V, Kazmar T, Catarino RR, Schernhuber K, Arnold CD, Stark A. Muerdter F, et al. Among authors: arnold cd. Nat Methods. 2018 Feb;15(2):141-149. doi: 10.1038/nmeth.4534. Epub 2017 Dec 11. Nat Methods. 2018. PMID: 29256496 Free PMC article.

9

A high-throughput method to identify trans-activation domains within transcription factor sequences.

Arnold CD, Nemčko F, Woodfin AR, Wienerroither S, Vlasova A, Schleiffer A, Pagani M, Rath M, Stark A. Arnold CD, et al. EMBO J. 2018 Aug 15;37(16):e98896. doi: 10.15252/embj.201798896. Epub 2018 Jul 13. EMBO J. 2018. PMID: 30006452 Free PMC article.

10

Transcriptional cofactors display specificity for distinct types of core promoters.

Haberle V, Arnold CD, Pagani M, Rath M, Schernhuber K, Stark A. Haberle V, et al. Among authors: arnold cd. Nature. 2019 Jun;570(7759):122-126. doi: 10.1038/s41586-019-1210-7. Epub 2019 May 15. Nature. 2019. PMID: 31092928 Free PMC article.

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