Stark A - Search Results

1

Differential cofactor dependencies define distinct types of human enhancers.

Neumayr C, Haberle V, Serebreni L, Karner K, Hendy O, Boija A, Henninger JE, Li CH, Stejskal K, Lin G, Bergauer K, Pagani M, Rath M, Mechtler K, Arnold CD, Stark A. Neumayr C, et al. Among authors: stark a. Nature. 2022 Jun;606(7913):406-413. doi: 10.1038/s41586-022-04779-x. Epub 2022 Jun 1. Nature. 2022. PMID: 35650434 Free PMC article.

2

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.

Zeitlinger J, Stark A, Kellis M, Hong JW, Nechaev S, Adelman K, Levine M, Young RA. Zeitlinger J, et al. Among authors: stark a. Nat Genet. 2007 Dec;39(12):1512-6. doi: 10.1038/ng.2007.26. Epub 2007 Nov 11. Nat Genet. 2007. PMID: 17994019 Free PMC article.

3

Histone modifications at human enhancers reflect global cell-type-specific gene expression.

Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, Ching KA, Antosiewicz-Bourget JE, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Crawford GE, Kellis M, Ren B. Heintzman ND, et al. Among authors: stark a. Nature. 2009 May 7;459(7243):108-12. doi: 10.1038/nature07829. Epub 2009 Mar 18. Nature. 2009. PMID: 19295514 Free PMC article.

4

A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors.

Handler D, Olivieri D, Novatchkova M, Gruber FS, Meixner K, Mechtler K, Stark A, Sachidanandam R, Brennecke J. Handler D, et al. Among authors: stark a. EMBO J. 2011 Aug 23;30(19):3977-93. doi: 10.1038/emboj.2011.308. EMBO J. 2011. PMID: 21863019 Free PMC article.

5

A computational pipeline for comparative ChIP-seq analyses.

Bardet AF, He Q, Zeitlinger J, Stark A. Bardet AF, et al. Among authors: stark a. Nat Protoc. 2011 Dec 15;7(1):45-61. doi: 10.1038/nprot.2011.420. Nat Protoc. 2011. PMID: 22179591

6

HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature.

Kvon EZ, Stampfel G, Yáñez-Cuna JO, Dickson BJ, Stark A. Kvon EZ, et al. Among authors: stark a. Genes Dev. 2012 May 1;26(9):908-13. doi: 10.1101/gad.188052.112. Epub 2012 Apr 12. Genes Dev. 2012. PMID: 22499593 Free PMC article.

7

Genome-wide quantitative enhancer activity maps identified by STARR-seq.

Arnold CD, Gerlach D, Stelzer C, Boryń ŁM, Rath M, Stark A. Arnold CD, et al. Among authors: stark a. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science.1232542. Epub 2013 Jan 17. Science. 2013. PMID: 23328393

8

Transcriptional enhancers: from properties to genome-wide predictions.

Shlyueva D, Stampfel G, Stark A. Shlyueva D, et al. Among authors: stark a. Nat Rev Genet. 2014 Apr;15(4):272-86. doi: 10.1038/nrg3682. Epub 2014 Mar 11. Nat Rev Genet. 2014. PMID: 24614317 Review.

9

Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin.

Shlyueva D, Stelzer C, Gerlach D, Yáñez-Cuna JO, Rath M, Boryń ŁM, Arnold CD, Stark A. Shlyueva D, et al. Among authors: stark a. Mol Cell. 2014 Apr 10;54(1):180-192. doi: 10.1016/j.molcel.2014.02.026. Epub 2014 Mar 27. Mol Cell. 2014. PMID: 24685159 Free article.

10

Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.

Yáñez-Cuna JO, Arnold CD, Stampfel G, Boryń LM, Gerlach D, Rath M, Stark A. Yáñez-Cuna JO, et al. Among authors: stark a. Genome Res. 2014 Jul;24(7):1147-56. doi: 10.1101/gr.169243.113. Epub 2014 Apr 8. Genome Res. 2014. PMID: 24714811 Free PMC article.

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