Chen CY - Search Results

1

Trans-genetic effects of circular RNA expression quantitative trait loci and potential causal mechanisms in autism.

Mai TL, Chen CY, Chen YC, Chiang TW, Chuang TJ. Mai TL, et al. Among authors: chen cy, chen yc. Mol Psychiatry. 2022 Nov;27(11):4695-4706. doi: 10.1038/s41380-022-01714-4. Epub 2022 Aug 12. Mol Psychiatry. 2022. PMID: 35962193 Free PMC article.

2

Biogenesis, identification, and function of exonic circular RNAs.

Chen I, Chen CY, Chuang TJ. Chen I, et al. Among authors: chen cy. Wiley Interdiscip Rev RNA. 2015 Sep-Oct;6(5):563-79. doi: 10.1002/wrna.1294. Epub 2015 Jul 31. Wiley Interdiscip Rev RNA. 2015. PMID: 26230526 Free PMC article. Review.

3

NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision.

Chuang TJ, Wu CS, Chen CY, Hung LY, Chiang TW, Yang MY. Chuang TJ, et al. Among authors: chen cy. Nucleic Acids Res. 2016 Feb 18;44(3):e29. doi: 10.1093/nar/gkv1013. Epub 2015 Oct 5. Nucleic Acids Res. 2016. PMID: 26442529 Free PMC article.

4

Purifying selection shapes the coincident SNP distribution of primate coding sequences.

Chen CY, Hung LY, Wu CS, Chuang TJ. Chen CY, et al. Sci Rep. 2016 Jun 3;6:27272. doi: 10.1038/srep27272. Sci Rep. 2016. PMID: 27255481 Free PMC article.

5

Assessment of imprinting- and genetic variation-dependent monoallelic expression using reciprocal allele descendants between human family trios.

Chuang TJ, Tseng YH, Chen CY, Wang YD. Chuang TJ, et al. Among authors: chen cy. Sci Rep. 2017 Aug 1;7(1):7038. doi: 10.1038/s41598-017-07514-z. Sci Rep. 2017. PMID: 28765567 Free PMC article.

6

An Evolutionary Landscape of A-to-I RNA Editome across Metazoan Species.

Hung LY, Chen YJ, Mai TL, Chen CY, Yang MY, Chiang TW, Wang YD, Chuang TJ. Hung LY, et al. Among authors: chen yj, chen cy. Genome Biol Evol. 2018 Feb 1;10(2):521-537. doi: 10.1093/gbe/evx277. Genome Biol Evol. 2018. PMID: 29294013 Free PMC article.

7

Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells.

Chuang TJ, Chen YJ, Chen CY, Mai TL, Wang YD, Yeh CS, Yang MY, Hsiao YT, Chang TH, Kuo TC, Cho HH, Shen CN, Kuo HC, Lu MY, Chen YH, Hsieh SC, Chiang TW. Chuang TJ, et al. Among authors: chen yj, chen yh, chen cy. Nucleic Acids Res. 2018 Apr 20;46(7):3671-3691. doi: 10.1093/nar/gky032. Nucleic Acids Res. 2018. PMID: 29385530 Free PMC article.

8

NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors.

Chen CY, Chuang TJ. Chen CY, et al. BMC Bioinformatics. 2019 Jan 3;20(1):3. doi: 10.1186/s12859-018-2589-0. BMC Bioinformatics. 2019. PMID: 30606103 Free PMC article.

9

Transcriptomopathies of pre- and post-symptomatic frontotemporal dementia-like mice with TDP-43 depletion in forebrain neurons.

Wu LS, Cheng WC, Chen CY, Wu MC, Wang YC, Tseng YH, Chuang TJ, Shen CJ. Wu LS, et al. Among authors: chen cy. Acta Neuropathol Commun. 2019 Mar 29;7(1):50. doi: 10.1186/s40478-019-0674-x. Acta Neuropathol Commun. 2019. PMID: 30922385 Free PMC article.

10

Comment on "A comprehensive overview and evaluation of circular RNA detection tools".

Chen CY, Chuang TJ. Chen CY, et al. PLoS Comput Biol. 2019 May 31;15(5):e1006158. doi: 10.1371/journal.pcbi.1006158. eCollection 2019 May. PLoS Comput Biol. 2019. PMID: 31150384 Free PMC article. No abstract available.

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