Karimi-Jafari MH - Search Results

1

Metastatic triple negative breast cancer adapts its metabolism to destination tissues while retaining key metabolic signatures.

Roshanzamir F, Robinson JL, Cook D, Karimi-Jafari MH, Nielsen J. Roshanzamir F, et al. Among authors: karimi jafari mh. Proc Natl Acad Sci U S A. 2022 Aug 30;119(35):e2205456119. doi: 10.1073/pnas.2205456119. Epub 2022 Aug 22. Proc Natl Acad Sci U S A. 2022. PMID: 35994654 Free PMC article.

2

iMM1865: A New Reconstruction of Mouse Genome-Scale Metabolic Model.

Khodaee S, Asgari Y, Totonchi M, Karimi-Jafari MH. Khodaee S, et al. Sci Rep. 2020 Apr 10;10(1):6177. doi: 10.1038/s41598-020-63235-w. Sci Rep. 2020. PMID: 32277147 Free PMC article.

3

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase.

Karamzadeh R, Karimi-Jafari MH, Sharifi-Zarchi A, Chitsaz H, Salekdeh GH, Moosavi-Movahedi AA. Karamzadeh R, et al. Sci Rep. 2017 Jun 16;7(1):3666. doi: 10.1038/s41598-017-03966-5. Sci Rep. 2017. PMID: 28623339 Free PMC article.

4

Identification of a missense variant in CLDN2 in obstructive azoospermia.

Askari M, Karamzadeh R, Ansari-Pour N, Karimi-Jafari MH, Almadani N, Sadighi Gilani MA, Gourabi H, Vosough Taghi Dizaj A, Mohseni Meybodi A, Sadeghi M, Bashamboo A, McElreavey K, Totonchi M. Askari M, et al. J Hum Genet. 2019 Oct;64(10):1023-1032. doi: 10.1038/s10038-019-0642-0. Epub 2019 Jul 18. J Hum Genet. 2019. PMID: 31320686

5

Integration and gene co-expression network analysis of scRNA-seq transcriptomes reveal heterogeneity and key functional genes in human spermatogenesis.

Salehi N, Karimi-Jafari MH, Totonchi M, Amiri-Yekta A. Salehi N, et al. Sci Rep. 2021 Sep 27;11(1):19089. doi: 10.1038/s41598-021-98267-3. Sci Rep. 2021. PMID: 34580317 Free PMC article.

6

Binder design for targeting SARS-CoV-2 spike protein: An in silico perspective.

Etemadi A, Moradi HR, Mohammadian F, Karimi-Jafari MH, Negahdari B, Asgari Y, Mazloomi M. Etemadi A, et al. Gene Rep. 2022 Mar;26:101452. doi: 10.1016/j.genrep.2021.101452. Epub 2021 Nov 26. Gene Rep. 2022. PMID: 34849425 Free PMC article.

7

Ensemble learning from ensemble docking: revisiting the optimum ensemble size problem.

Mohammadi S, Narimani Z, Ashouri M, Firouzi R, Karimi-Jafari MH. Mohammadi S, et al. Sci Rep. 2022 Jan 10;12(1):410. doi: 10.1038/s41598-021-04448-5. Sci Rep. 2022. PMID: 35013496 Free PMC article.

8

Intermediate-aided allostery mechanism for α-glucosidase by Xanthene-11v as an inhibitor using residue interaction network analysis.

Moosavi-Movahedi Z, Salehi N, Habibi-Rezaei M, Qassemi F, Karimi-Jafari MH. Moosavi-Movahedi Z, et al. Among authors: karimi jafari mh. J Mol Graph Model. 2023 Jul;122:108495. doi: 10.1016/j.jmgm.2023.108495. Epub 2023 Apr 18. J Mol Graph Model. 2023. PMID: 37116337

9

Structural insights into the substrate-binding site of main protease for the structure-based COVID-19 drug discovery.

Firouzi R, Ashouri M, Karimi-Jafari MH. Firouzi R, et al. Among authors: karimi jafari mh. Proteins. 2022 May;90(5):1090-1101. doi: 10.1002/prot.26318. Epub 2022 Feb 14. Proteins. 2022. PMID: 35119780

10

Red/ox states of human protein disulfide isomerase regulate binding affinity of 17 beta-estradiol.

Karamzadeh R, Karimi-Jafari MH, Saboury AA, Salekdeh GH, Moosavi-Movahedi AA. Karamzadeh R, et al. Arch Biochem Biophys. 2017 Apr 1;619:35-44. doi: 10.1016/j.abb.2017.02.010. Epub 2017 Feb 28. Arch Biochem Biophys. 2017. PMID: 28257787

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