Kuan PF - Search Results

1

A systematic assessment of cell type deconvolution algorithms for DNA methylation data.

Song J, Kuan PF. Song J, et al. Among authors: kuan pf. Brief Bioinform. 2022 Nov 19;23(6):bbac449. doi: 10.1093/bib/bbac449. Brief Bioinform. 2022. PMID: 36242584 Free PMC article.

2

methylDMV: SIMULTANEOUS DETECTION OF DIFFERENTIAL DNA METHYLATION AND VARIABILITY WITH CONFOUNDER ADJUSTMENT.

Kuan PF, Song J, He S. Kuan PF, et al. Pac Symp Biocomput. 2017;22:461-472. doi: 10.1142/9789813207813_0043. Pac Symp Biocomput. 2017. PMID: 27896998 Free article.

3

methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing.

Ren X, Kuan PF. Ren X, et al. Among authors: kuan pf. Bioinformatics. 2019 Jun 1;35(11):1958-1959. doi: 10.1093/bioinformatics/bty892. Bioinformatics. 2019. PMID: 30346483

4

DNA Methylation Classes of Stage II and III Primary Melanomas and Their Clinical and Prognostic Significance.

Conway K, Edmiston SN, Vondras A, Reiner A, Corcoran DL, Shen R, Parrish EA, Hao H, Lin L, Kenney JM, Ilelaboye G, Kostrzewa CE, Kuan PF, Busam KJ, Lezcano C, Lee TK, Hernando E, Googe PB, Ollila DW, Moschos S, Gorlov I, Amos CI, Ernstoff MS, Cust AE, Wilmott JS, Scolyer RA, Mann GJ, Vergara IA, Ko J, Rees JR, Yan S, Nagore E, Bosenberg M, Rothberg BG, Osman I, Lee JE, Saenger Y, Bogner P, Thompson CL, Gerstenblith M, Holmen SL, Funchain P, Brunsgaard E, Depcik-Smith ND, Luo L, Boyce T, Orlow I, Begg CB, Berwick M, Thomas NE; InterMEL Study Group. Conway K, et al. Among authors: kuan pf. JCO Precis Oncol. 2024 Nov;8:e2400375. doi: 10.1200/PO-24-00375. Epub 2024 Nov 7. JCO Precis Oncol. 2024. PMID: 39509669

5

Breast tumor DNA methylation patterns associated with smoking in the Carolina Breast Cancer Study.

Conway K, Edmiston SN, Parrish E, Bryant C, Tse CK, Swift-Scanlan T, McCullough LE, Kuan PF. Conway K, et al. Among authors: kuan pf. Breast Cancer Res Treat. 2017 Jun;163(2):349-361. doi: 10.1007/s10549-017-4178-8. Epub 2017 Mar 8. Breast Cancer Res Treat. 2017. PMID: 28275920 Free PMC article.

6

A systematic evaluation of nucleotide properties for CRISPR sgRNA design.

Kuan PF, Powers S, He S, Li K, Zhao X, Huang B. Kuan PF, et al. BMC Bioinformatics. 2017 Jun 6;18(1):297. doi: 10.1186/s12859-017-1697-6. BMC Bioinformatics. 2017. PMID: 28587596 Free PMC article.

7

Enhanced exposure assessment and genome-wide DNA methylation in World Trade Center disaster responders.

Kuan PF, Mi Z, Georgopoulos P, Hashim D, Luft BJ, Boffetta P. Kuan PF, et al. Eur J Cancer Prev. 2019 May;28(3):225-233. doi: 10.1097/CEJ.0000000000000460. Eur J Cancer Prev. 2019. PMID: 30001286 Free PMC article.

8

Multiple-kernel learning for genomic data mining and prediction.

Wilson CM, Li K, Yu X, Kuan PF, Wang X. Wilson CM, et al. Among authors: kuan pf. BMC Bioinformatics. 2019 Aug 15;20(1):426. doi: 10.1186/s12859-019-2992-1. BMC Bioinformatics. 2019. PMID: 31416413 Free PMC article.

9

Negative binomial additive model for RNA-Seq data analysis.

Ren X, Kuan PF. Ren X, et al. Among authors: kuan pf. BMC Bioinformatics. 2020 May 1;21(1):171. doi: 10.1186/s12859-020-3506-x. BMC Bioinformatics. 2020. PMID: 32357831 Free PMC article.

10

Efficient gradient boosting for prognostic biomarker discovery.

Li K, Yao S, Zhang Z, Cao B, Wilson CM, Kalos D, Kuan PF, Zhu R, Wang X. Li K, et al. Among authors: kuan pf. Bioinformatics. 2022 Mar 4;38(6):1631-1638. doi: 10.1093/bioinformatics/btab869. Bioinformatics. 2022. PMID: 34978570 Free PMC article.

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