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Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons.
Chaguza C, Coppi A, Earnest R, Ferguson D, Kerantzas N, Warner F, Young HP, Breban MI, Billig K, Koch RT, Pham K, Kalinich CC, Ott IM, Fauver JR, Hahn AM, Tikhonova IR, Castaldi C, De Kumar B, Pettker CM, Warren JL, Weinberger DM, Landry ML, Peaper DR, Schulz W, Vogels CBF, Grubaugh ND. Chaguza C, et al. Among authors: hahn am. Med. 2022 May 13;3(5):325-334.e4. doi: 10.1016/j.medj.2022.03.010. Epub 2022 Apr 6. Med. 2022. PMID: 35399324 Free PMC article.
Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.
Chaguza C, Hahn AM, Petrone ME, Zhou S, Ferguson D, Breban MI, Pham K, Peña-Hernández MA, Castaldi C, Hill V; Yale SARS-CoV-2 Genomic Surveillance Initiative; Schulz W, Swanstrom RI, Roberts SC, Grubaugh ND. Chaguza C, et al. Among authors: hahn am. medRxiv [Preprint]. 2022 Jul 2:2022.06.29.22276868. doi: 10.1101/2022.06.29.22276868. medRxiv. 2022. Update in: Cell Rep Med. 2023 Feb 21;4(2):100943. doi: 10.1016/j.xcrm.2023.100943 PMID: 35794895 Free PMC article. Updated. Preprint.
Persistent SARS-CoV-2 infection: significance and implications.
Machkovech HM, Hahn AM, Garonzik Wang J, Grubaugh ND, Halfmann PJ, Johnson MC, Lemieux JE, O'Connor DH, Piantadosi A, Wei W, Friedrich TC. Machkovech HM, et al. Among authors: hahn am. Lancet Infect Dis. 2024 Jul;24(7):e453-e462. doi: 10.1016/S1473-3099(23)00815-0. Epub 2024 Feb 7. Lancet Infect Dis. 2024. PMID: 38340735 Review.
Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.
Li K, Chaguza C, Stamp J, Chew YT, Chen NFG, Ferguson D, Pandya S, Kerantzas N, Schulz W; Yale SARS-CoV-2 Genomic Surveillance Initiative; Hahn AM, Ogbunugafor CB, Pitzer VE, Crawford L, Weinberger DM, Grubaugh ND. Li K, et al. Among authors: hahn am. PLoS Comput Biol. 2024 Sep 17;20(9):e1012469. doi: 10.1371/journal.pcbi.1012469. eCollection 2024 Sep. PLoS Comput Biol. 2024. PMID: 39288189 Free PMC article.
Genome Sequence of a Recombinant SARS-CoV-2 Lineage XAM (BA.1.1/BA.2.9) Strain from a Clinical Sample in Santo Domingo, Dominican Republic.
Paulino-Ramírez R, Pham K, Breban MI, Peguero A, Jabier M, Sánchez N, Eustate I, Ruiz I, Grubaugh ND, Hahn AM. Paulino-Ramírez R, et al. Among authors: hahn am. Microbiol Resour Announc. 2023 Jan 24;12(1):e0111322. doi: 10.1128/mra.01113-22. Epub 2022 Nov 30. Microbiol Resour Announc. 2023. PMID: 36448812 Free PMC article.
Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.
Chaguza C, Hahn AM, Petrone ME, Zhou S, Ferguson D, Breban MI, Pham K, Peña-Hernández MA, Castaldi C, Hill V; Yale SARS-CoV-2 Genomic Surveillance Initiative; Schulz W, Swanstrom RI, Roberts SC, Grubaugh ND. Chaguza C, et al. Among authors: hahn am. Cell Rep Med. 2023 Feb 21;4(2):100943. doi: 10.1016/j.xcrm.2023.100943. Epub 2023 Jan 27. Cell Rep Med. 2023. PMID: 36791724 Free PMC article.
Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1.
Rodino KG, Peaper DR, Kelly BJ, Bushman F, Marques A, Adhikari H, Tu ZJ, Marrero Rolon R, Westblade LF, Green DA, Berry GJ, Wu F, Annavajhala MK, Uhlemann AC, Parikh BA, McMillen T, Jani K, Babady NE, Hahn AM, Koch RT, Grubaugh ND; Yale SARS-CoV-2 Genomic Surveillance Initiative; Rhoads DD. Rodino KG, et al. Among authors: hahn am. J Clin Microbiol. 2022 Jun 15;60(6):e0060022. doi: 10.1128/jcm.00600-22. Epub 2022 May 18. J Clin Microbiol. 2022. PMID: 35582905 Free PMC article.
64 results