Vangaveti S - Search Results

1

Toehold clipping: A mechanism for remote control of DNA strand displacement.

Faheem H, Mathivanan J, Talbot H, Zeghal H, Vangaveti S, Sheng J, Chen AA, Chandrasekaran AR. Faheem H, et al. Among authors: vangaveti s. Nucleic Acids Res. 2023 May 8;51(8):4055-4063. doi: 10.1093/nar/gkac1152. Nucleic Acids Res. 2023. PMID: 36477864 Free PMC article.

2

Integrating ab initio and template-based algorithms for protein-protein complex structure prediction.

Vangaveti S, Vreven T, Zhang Y, Weng Z. Vangaveti S, et al. Bioinformatics. 2020 Feb 1;36(3):751-757. doi: 10.1093/bioinformatics/btz623. Bioinformatics. 2020. PMID: 31393558 Free PMC article.

3

Electrostatic correlations at the Stern layer: physics or chemistry?

Travesset A, Vangaveti S. Travesset A, et al. Among authors: vangaveti s. J Chem Phys. 2009 Nov 14;131(18):185102. doi: 10.1063/1.3257735. J Chem Phys. 2009. PMID: 19916628

4

Synthesis, base pairing and structure studies of geranylated RNA.

Wang R, Vangaveti S, Ranganathan SV, Basanta-Sanchez M, Haruehanroengra P, Chen A, Sheng J. Wang R, et al. Among authors: vangaveti s. Nucleic Acids Res. 2016 Jul 27;44(13):6036-45. doi: 10.1093/nar/gkw544. Epub 2016 Jun 15. Nucleic Acids Res. 2016. PMID: 27307604 Free PMC article.

5

Advances in RNA molecular dynamics: a simulator's guide to RNA force fields.

Vangaveti S, Ranganathan SV, Chen AA. Vangaveti S, et al. Wiley Interdiscip Rev RNA. 2017 Mar;8(2). doi: 10.1002/wrna.1396. Epub 2016 Oct 4. Wiley Interdiscip Rev RNA. 2017. PMID: 27704698 Review.

6

Nature's Selection of Geranyl Group as a tRNA Modification: The Effects of Chain Length on Base-Pairing Specificity.

Haruehanroengra P, Vangaveti S, Ranganathan SV, Wang R, Chen A, Sheng J. Haruehanroengra P, et al. Among authors: vangaveti s. ACS Chem Biol. 2017 Jun 16;12(6):1504-1513. doi: 10.1021/acschembio.7b00108. Epub 2017 Apr 18. ACS Chem Biol. 2017. PMID: 28418649

7

Terpene Chain Length Affects the Base Pairing Discrimination of S-geranyl-2-thiouridine in RNA Duplex.

Haruehanroengra P, Vangaveti S, Ranganathan SV, Mao S, Su MD, Chen AA, Sheng J. Haruehanroengra P, et al. Among authors: vangaveti s. iScience. 2020 Nov 26;23(12):101866. doi: 10.1016/j.isci.2020.101866. eCollection 2020 Dec 18. iScience. 2020. PMID: 33319183 Free PMC article.

8

Structural and Binding Effects of Chemical Modifications on Thrombin Binding Aptamer (TBA).

Valsangkar V, Vangaveti S, Lee GW, Fahssi WM, Awan WS, Huang Y, Chen AA, Sheng J. Valsangkar V, et al. Among authors: vangaveti s. Molecules. 2021 Jul 30;26(15):4620. doi: 10.3390/molecules26154620. Molecules. 2021. PMID: 34361773 Free PMC article.

9

Challenges with Simulating Modified RNA: Insights into Role and Reciprocity of Experimental and Computational Approaches.

D'Esposito RJ, Myers CA, Chen AA, Vangaveti S. D'Esposito RJ, et al. Among authors: vangaveti s. Genes (Basel). 2022 Mar 18;13(3):540. doi: 10.3390/genes13030540. Genes (Basel). 2022. PMID: 35328093 Free PMC article. Review.

10

High-throughput single-molecule quantification of individual base stacking energies in nucleic acids.

Abraham Punnoose J, Thomas KJ, Chandrasekaran AR, Vilcapoma J, Hayden A, Kilpatrick K, Vangaveti S, Chen A, Banco T, Halvorsen K. Abraham Punnoose J, et al. Among authors: vangaveti s. Nat Commun. 2023 Feb 6;14(1):631. doi: 10.1038/s41467-023-36373-8. Nat Commun. 2023. PMID: 36746949 Free PMC article.

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