Ramirez M - Search Results

1

LMAS: evaluating metagenomic short de novo assembly methods through defined communities.

Mendes CI, Vila-Cerqueira P, Motro Y, Moran-Gilad J, Carriço JA, Ramirez M. Mendes CI, et al. Among authors: ramirez m. Gigascience. 2022 Dec 28;12:giac122. doi: 10.1093/gigascience/giac122. Gigascience. 2022. PMID: 36576131 Free PMC article.

2

Characterization of the genetic lineages responsible for pneumococcal invasive disease in Portugal.

Serrano I, Melo-Cristino J, Carriço JA, Ramirez M. Serrano I, et al. Among authors: ramirez m. J Clin Microbiol. 2005 Apr;43(4):1706-15. doi: 10.1128/JCM.43.4.1706-1715.2005. J Clin Microbiol. 2005. PMID: 15814989 Free PMC article.

3

Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes.

Carriço JA, Silva-Costa C, Melo-Cristino J, Pinto FR, de Lencastre H, Almeida JS, Ramirez M. Carriço JA, et al. Among authors: ramirez m. J Clin Microbiol. 2006 Jul;44(7):2524-32. doi: 10.1128/JCM.02536-05. J Clin Microbiol. 2006. PMID: 16825375 Free PMC article.

4

Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement.

Pinto FR, Carriço JA, Ramirez M, Almeida JS. Pinto FR, et al. Among authors: ramirez m. BMC Bioinformatics. 2007 Feb 7;8:44. doi: 10.1186/1471-2105-8-44. BMC Bioinformatics. 2007. PMID: 17286861 Free PMC article.

5

Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains.

Faria NA, Carrico JA, Oliveira DC, Ramirez M, de Lencastre H. Faria NA, et al. Among authors: ramirez m. J Clin Microbiol. 2008 Jan;46(1):136-44. doi: 10.1128/JCM.01684-07. Epub 2007 Nov 7. J Clin Microbiol. 2008. PMID: 17989188 Free PMC article.

6

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach.

Francisco AP, Bugalho M, Ramirez M, Carriço JA. Francisco AP, et al. Among authors: ramirez m. BMC Bioinformatics. 2009 May 18;10:152. doi: 10.1186/1471-2105-10-152. BMC Bioinformatics. 2009. PMID: 19450271 Free PMC article.

7

Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones expressing the same serotype.

Sá-Leão R, Pinto F, Aguiar S, Nunes S, Carriço JA, Frazão N, Gonçalves-Sousa N, Melo-Cristino J, de Lencastre H, Ramirez M. Sá-Leão R, et al. Among authors: ramirez m. J Clin Microbiol. 2011 Apr;49(4):1369-75. doi: 10.1128/JCM.01763-10. Epub 2011 Jan 26. J Clin Microbiol. 2011. PMID: 21270219 Free PMC article.

8

Evaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measures.

Severiano A, Carriço JA, Robinson DA, Ramirez M, Pinto FR. Severiano A, et al. Among authors: ramirez m. PLoS One. 2011;6(5):e19539. doi: 10.1371/journal.pone.0019539. Epub 2011 May 18. PLoS One. 2011. PMID: 21611165 Free PMC article.

9

Adjusted Wallace coefficient as a measure of congruence between typing methods.

Severiano A, Pinto FR, Ramirez M, Carriço JA. Severiano A, et al. Among authors: ramirez m. J Clin Microbiol. 2011 Nov;49(11):3997-4000. doi: 10.1128/JCM.00624-11. Epub 2011 Sep 14. J Clin Microbiol. 2011. PMID: 21918028 Free PMC article.

10

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

Francisco AP, Vaz C, Monteiro PT, Melo-Cristino J, Ramirez M, Carriço JA. Francisco AP, et al. Among authors: ramirez m. BMC Bioinformatics. 2012 May 8;13:87. doi: 10.1186/1471-2105-13-87. BMC Bioinformatics. 2012. PMID: 22568821 Free PMC article.

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