Banerjee S - Search Results

1

GOThresher: a program to remove annotation biases from protein function annotation datasets.

Joshi P, Banerjee S, Hu X, Khade PM, Friedberg I. Joshi P, et al. Among authors: banerjee s. Bioinformatics. 2023 Jan 1;39(1):btad048. doi: 10.1093/bioinformatics/btad048. Bioinformatics. 2023. PMID: 36688705

2

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.

Banerjee S, Bhandary P, Woodhouse M, Sen TZ, Wise RP, Andorf CM. Banerjee S, et al. BMC Bioinformatics. 2021 Apr 20;22(1):205. doi: 10.1186/s12859-021-04120-9. BMC Bioinformatics. 2021. PMID: 33879057 Free PMC article.

3

NGPINT: a next-generation protein-protein interaction software.

Banerjee S, Velásquez-Zapata V, Fuerst G, Elmore JM, Wise RP. Banerjee S, et al. Brief Bioinform. 2021 Jul 20;22(4):bbaa351. doi: 10.1093/bib/bbaa351. Brief Bioinform. 2021. PMID: 33367498

4

Powdery mildew effectors AVR_A1 and BEC1016 target the ER J-domain protein HvERdj3B required for immunity in barley.

Li Z, Velásquez-Zapata V, Elmore JM, Li X, Xie W, Deb S, Tian X, Banerjee S, Jørgensen HJL, Pedersen C, Wise RP, Thordal-Christensen H. Li Z, et al. Among authors: banerjee s. Mol Plant Pathol. 2024 May;25(5):e13463. doi: 10.1111/mpp.13463. Mol Plant Pathol. 2024. PMID: 38695677 Free PMC article.

5

Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor.

Velásquez-Zapata V, Elmore JM, Banerjee S, Dorman KS, Wise RP. Velásquez-Zapata V, et al. Among authors: banerjee s. PLoS Comput Biol. 2021 Apr 2;17(4):e1008890. doi: 10.1371/journal.pcbi.1008890. eCollection 2021 Apr. PLoS Comput Biol. 2021. PMID: 33798202 Free PMC article.

6

Correction to: small RNA discovery in the interaction between barley and the powdery mildew pathogen.

Hunt M, Banerjee S, Surana P, Liu M, Fuerst G, Mathioni S, Meyers BC, Nettleton D, Wise RP. Hunt M, et al. Among authors: banerjee s. BMC Genomics. 2019 Sep 4;20(1):697. doi: 10.1186/s12864-019-6012-7. BMC Genomics. 2019. PMID: 31484492 Free PMC article.

7

Small RNA discovery in the interaction between barley and the powdery mildew pathogen.

Hunt M, Banerjee S, Surana P, Liu M, Fuerst G, Mathioni S, Meyers BC, Nettleton D, Wise RP. Hunt M, et al. Among authors: banerjee s. BMC Genomics. 2019 Jul 25;20(1):610. doi: 10.1186/s12864-019-5947-z. BMC Genomics. 2019. PMID: 31345162 Free PMC article.

8

Examining Healthy Lifestyles as a Mediator of the Association Between Socially Determined Vulnerabilities and Incident Heart Failure.

Singh N, Jonas C, Pinheiro LC, Lau JD, Cui J, Long L, Banerjee S, Durant RW, Sterling MR, Shikany JM, Safford MM, Levitan EB, Goyal P. Singh N, et al. Among authors: banerjee s. Circ Cardiovasc Qual Outcomes. 2025 Jan 16:e011107. doi: 10.1161/CIRCOUTCOMES.124.011107. Online ahead of print. Circ Cardiovasc Qual Outcomes. 2025. PMID: 39817332

9

Fine particulate matter from burning oil and gas and associated neurological symptoms among Deepwater Horizon oil spill cleanup workers.

Norris CL, Sandler DP, Pratt GC, Stenzel MR, Stewart PA, Jackson WB 2nd, Christenbury KE, Werder EJ, Groth CP, Banerjee S, Lawrence KG, Engel LS. Norris CL, et al. Among authors: banerjee s. Environ Sci Process Impacts. 2025 Jan 16. doi: 10.1039/d4em00469h. Online ahead of print. Environ Sci Process Impacts. 2025. PMID: 39815820

10

Physician knowledge, use, and perceptions of genetic biomarker testing for the management of patients with newly diagnosed advanced ovarian cancer: an international physician survey.

Banerjee S, Eskander RN, Bailey T, Ambler W, Volpe S, Özgören O, Grabowski JP, Valabrega G. Banerjee S, et al. Future Oncol. 2025 Jan 15:1-9. doi: 10.1080/14796694.2025.2449782. Online ahead of print. Future Oncol. 2025. PMID: 39815643

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