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High-throughput nanopore sequencing of Treponema pallidum tandem repeat genes arp and tp0470 reveals clade-specific patterns and recapitulates global whole genome phylogeny.
Lieberman NAP, Armstrong TD, Chung B, Pfalmer D, Hennelly CM, Haynes A, Romeis E, Wang QQ, Zhang RL, Kou CX, Ciccarese G, Conte ID, Cusini M, Drago F, Nakayama SI, Lee K, Ohnishi M, Konda KA, Vargas SK, Eguiluz M, Caceres CF, Klausner JD, Mitja O, Rompalo A, Mulcahy F, Hook EW 3rd, Hoffman IF, Matoga MM, Zheng H, Yang B, Lopez-Medina E, Ramirez LG, Radolf JD, Hawley KL, Salazar JC, Lukehart SA, Seña AC, Parr JB, Giacani L, Greninger AL. Lieberman NAP, et al. Among authors: pfalmer d. Front Microbiol. 2022 Sep 20;13:1007056. doi: 10.3389/fmicb.2022.1007056. eCollection 2022. Front Microbiol. 2022. PMID: 36204625 Free PMC article.
SPIDR: small-molecule peptide-influenced drug repurposing.
King MD, Long T, Pfalmer DL, Andersen TL, McDougal OM. King MD, et al. Among authors: pfalmer dl. BMC Bioinformatics. 2018 Apr 16;19(1):138. doi: 10.1186/s12859-018-2153-y. BMC Bioinformatics. 2018. PMID: 29661129 Free PMC article.