Sosnick TR - Search Results

1

Factors That Control the Force Needed to Unfold a Membrane Protein in Silico Depend on the Mode of Denaturation.

Faruk NF, Peng X, Sosnick TR. Faruk NF, et al. Among authors: sosnick tr. Int J Mol Sci. 2023 Jan 31;24(3):2654. doi: 10.3390/ijms24032654. Int J Mol Sci. 2023. PMID: 36768981 Free PMC article.

2

Early collapse is not an obligate step in protein folding.

Jacob J, Krantz B, Dothager RS, Thiyagarajan P, Sosnick TR. Jacob J, et al. Among authors: sosnick tr. J Mol Biol. 2004 Apr 23;338(2):369-82. doi: 10.1016/j.jmb.2004.02.065. J Mol Biol. 2004. PMID: 15066438

3

Small proteins fold through transition states with native-like topologies.

Pandit AD, Jha A, Freed KF, Sosnick TR. Pandit AD, et al. Among authors: sosnick tr. J Mol Biol. 2006 Aug 25;361(4):755-70. doi: 10.1016/j.jmb.2006.06.041. Epub 2006 Jul 7. J Mol Biol. 2006. PMID: 16876194

4

Psi-constrained simulations of protein folding transition states: implications for calculating.

Baxa MC, Freed KF, Sosnick TR. Baxa MC, et al. Among authors: sosnick tr. J Mol Biol. 2009 Mar 6;386(4):920-8. doi: 10.1016/j.jmb.2009.01.010. J Mol Biol. 2009. PMID: 19244613 Free PMC article.

5

Protein vivisection reveals elusive intermediates in folding.

Zheng Z, Sosnick TR. Zheng Z, et al. Among authors: sosnick tr. J Mol Biol. 2010 Apr 2;397(3):777-88. doi: 10.1016/j.jmb.2010.01.056. Epub 2010 Feb 6. J Mol Biol. 2010. PMID: 20144618 Free PMC article.

6

The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized).

Yoo TY, Adhikari A, Xia Z, Huynh T, Freed KF, Zhou R, Sosnick TR. Yoo TY, et al. Among authors: sosnick tr. J Mol Biol. 2012 Jul 13;420(3):220-34. doi: 10.1016/j.jmb.2012.04.013. Epub 2012 Apr 18. J Mol Biol. 2012. PMID: 22522126 Free PMC article.

7

Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange.

Yu W, Baxa MC, Gagnon I, Freed KF, Sosnick TR. Yu W, et al. Among authors: sosnick tr. Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):4747-52. doi: 10.1073/pnas.1522500113. Epub 2016 Apr 13. Proc Natl Acad Sci U S A. 2016. PMID: 27078098 Free PMC article.

8

A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations.

Wang Z, Jumper JM, Wang S, Freed KF, Sosnick TR. Wang Z, et al. Among authors: sosnick tr. Biophys J. 2018 Nov 20;115(10):1872-1884. doi: 10.1016/j.bpj.2018.10.012. Epub 2018 Oct 23. Biophys J. 2018. PMID: 30413241 Free PMC article.

9

Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours.

Jumper JM, Faruk NF, Freed KF, Sosnick TR. Jumper JM, et al. Among authors: sosnick tr. PLoS Comput Biol. 2018 Dec 27;14(12):e1006578. doi: 10.1371/journal.pcbi.1006578. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30589834 Free PMC article.

10

Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics.

Jumper JM, Faruk NF, Freed KF, Sosnick TR. Jumper JM, et al. Among authors: sosnick tr. PLoS Comput Biol. 2018 Dec 27;14(12):e1006342. doi: 10.1371/journal.pcbi.1006342. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30589846 Free PMC article.

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