Li C - Search Results

1

Identification of metal ion-binding sites in RNA structures using deep learning method.

Zhao Y, Wang J, Chang F, Gong W, Liu Y, Li C. Zhao Y, et al. Among authors: li c. Brief Bioinform. 2023 Mar 19;24(2):bbad049. doi: 10.1093/bib/bbad049. Brief Bioinform. 2023. PMID: 36772993

2

Exploring movement and energy in human P-glycoprotein conformational rearrangement.

Zhang Y, Gong W, Wang Y, Liu Y, Li C. Zhang Y, et al. Among authors: li c. J Biomol Struct Dyn. 2019 Mar;37(5):1104-1119. doi: 10.1080/07391102.2018.1461133. Epub 2018 Apr 24. J Biomol Struct Dyn. 2019. PMID: 29620438

3

Interpreting the Dynamics of Binding Interactions of snRNA and U1A Using a Coarse-Grained Model.

Han Z, Shao Q, Gong W, Wang S, Su J, Li C, Zhang Y. Han Z, et al. Among authors: li c. Biophys J. 2019 May 7;116(9):1625-1636. doi: 10.1016/j.bpj.2019.03.008. Epub 2019 Mar 21. Biophys J. 2019. PMID: 30975455 Free PMC article.

4

DM-RPIs: Predicting ncRNA-protein interactions using stacked ensembling strategy.

Cheng S, Zhang L, Tan J, Gong W, Li C, Zhang X. Cheng S, et al. Among authors: li c. Comput Biol Chem. 2019 Dec;83:107088. doi: 10.1016/j.compbiolchem.2019.107088. Epub 2019 Jul 6. Comput Biol Chem. 2019. PMID: 31330489

5

Analyses on clustering of the conserved residues at protein-RNA interfaces and its application in binding site identification.

Yang Z, Deng X, Liu Y, Gong W, Li C. Yang Z, et al. Among authors: li c. BMC Bioinformatics. 2020 Feb 17;21(1):57. doi: 10.1186/s12859-020-3398-9. BMC Bioinformatics. 2020. PMID: 32066366 Free PMC article.

6

Inferring Virus-Host relationship between HPV and its host Homo sapiens using protein interaction network.

Farooq QUA, Shaukat Z, Zhou T, Aiman S, Gong W, Li C. Farooq QUA, et al. Among authors: li c. Sci Rep. 2020 May 26;10(1):8719. doi: 10.1038/s41598-020-65837-w. Sci Rep. 2020. PMID: 32457456 Free PMC article.

7

A study on allosteric communication in U1A-snRNA binding interactions: network analysis combined with molecular dynamics data.

Shao Q, Gong W, Li C. Shao Q, et al. Among authors: li c. Biophys Chem. 2020 Sep;264:106393. doi: 10.1016/j.bpc.2020.106393. Epub 2020 May 11. Biophys Chem. 2020. PMID: 32653695

8

aPRBind: protein-RNA interface prediction by combining sequence and I-TASSER model-based structural features learned with convolutional neural networks.

Liu Y, Gong W, Zhao Y, Deng X, Zhang S, Li C. Liu Y, et al. Among authors: li c. Bioinformatics. 2021 May 17;37(7):937-942. doi: 10.1093/bioinformatics/btaa747. Bioinformatics. 2021. PMID: 32821925

9

SNB-PSSM: A spatial neighbor-based PSSM used for protein-RNA binding site prediction.

Liu Y, Gong W, Yang Z, Li C. Liu Y, et al. Among authors: li c. J Mol Recognit. 2021 Jun;34(6):e2887. doi: 10.1002/jmr.2887. Epub 2021 Jan 14. J Mol Recognit. 2021. PMID: 33442949

10

Equally Weighted Multiscale Elastic Network Model and Its Comparison with Traditional and Parameter-Free Models.

Gong W, Liu Y, Zhao Y, Wang S, Han Z, Li C. Gong W, et al. Among authors: li c. J Chem Inf Model. 2021 Feb 22;61(2):921-937. doi: 10.1021/acs.jcim.0c01178. Epub 2021 Jan 26. J Chem Inf Model. 2021. PMID: 33496590

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