Rouchka EC - Search Results

1

Construction of a searchable database for gene expression changes in spinal cord injury experiments.

Rouchka EC, de Almeida C, House RB, Daneshmand JC, Chariker JH, Saraswat-Ohri S, Gomes C, Sharp M, Shum-Siu A, Cesarz GM, Petruska JC, Magnuson DSK. Rouchka EC, et al. bioRxiv [Preprint]. 2023 Feb 3:2023.02.01.526630. doi: 10.1101/2023.02.01.526630. bioRxiv. 2023. Update in: J Neurotrauma. 2024 May;41(9-10):1030-1043. doi: 10.1089/neu.2023.0035 PMID: 36778366 Free PMC article. Updated. Preprint.

2

Comparison of whole genome assemblies of the human genome.

Rouchka EC, Gish W, States DJ. Rouchka EC, et al. Nucleic Acids Res. 2002 Nov 15;30(22):5004-14. doi: 10.1093/nar/gkf633. Nucleic Acids Res. 2002. PMID: 12434005 Free PMC article.

3

Codon usage bias as a function of generation time and life expectancy.

Mahdi RN, Rouchka EC. Mahdi RN, et al. Among authors: rouchka ec. Bioinformation. 2012;8(3):158-62. doi: 10.6026/97320630008158. Epub 2012 Feb 3. Bioinformation. 2012. PMID: 22368389 Free PMC article.

4

Gibbs Recursive Sampler: finding transcription factor binding sites.

Thompson W, Rouchka EC, Lawrence CE. Thompson W, et al. Among authors: rouchka ec. Nucleic Acids Res. 2003 Jul 1;31(13):3580-5. doi: 10.1093/nar/gkg608. Nucleic Acids Res. 2003. PMID: 12824370 Free PMC article.

5

UTR reconstruction and analysis using genomically aligned EST sequences.

Kan Z, Gish W, Rouchka E, Glasscock J, States D. Kan Z, et al. Proc Int Conf Intell Syst Mol Biol. 2000;8:218-27. Proc Int Conf Intell Syst Mol Biol. 2000. PMID: 10977083

6

AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities.

Mohammad F, Flight RM, Harrison BJ, Petruska JC, Rouchka EC. Mohammad F, et al. Among authors: rouchka ec. BMC Bioinformatics. 2012 Sep 12;13:229. doi: 10.1186/1471-2105-13-229. BMC Bioinformatics. 2012. PMID: 22967011 Free PMC article.

7

The Transcriptional Response of Neurotrophins and Their Tyrosine Kinase Receptors in Lumbar Sensorimotor Circuits to Spinal Cord Contusion is Affected by Injury Severity and Survival Time.

Hougland MT, Harrison BJ, Magnuson DS, Rouchka EC, Petruska JC. Hougland MT, et al. Among authors: rouchka ec. Front Physiol. 2013 Jan 9;3:478. doi: 10.3389/fphys.2012.00478. eCollection 2012. Front Physiol. 2013. PMID: 23316162 Free PMC article.

8

IB4-binding sensory neurons in the adult rat express a novel 3' UTR-extended isoform of CaMK4 that is associated with its localization to axons.

Harrison BJ, Flight RM, Gomes C, Venkat G, Ellis SR, Sankar U, Twiss JL, Rouchka EC, Petruska JC. Harrison BJ, et al. Among authors: rouchka ec. J Comp Neurol. 2014 Feb 1;522(2):308-36. doi: 10.1002/cne.23398. J Comp Neurol. 2014. PMID: 23817991 Free PMC article.

9

categoryCompare, an analytical tool based on feature annotations.

Flight RM, Harrison BJ, Mohammad F, Bunge MB, Moon LD, Petruska JC, Rouchka EC. Flight RM, et al. Among authors: rouchka ec. Front Genet. 2014 Apr 29;5:98. doi: 10.3389/fgene.2014.00098. eCollection 2014. Front Genet. 2014. PMID: 24808906 Free PMC article.

10

Proceedings of the Thirteenth Annual UT- KBRIN Bioinformatics Summit 2014.

Rouchka EC, Chariker JH. Rouchka EC, et al. BMC Bioinformatics. 2014;15 Suppl 10(Suppl 10):I1. doi: 10.1186/1471-2105-15-s10-i1. Epub 2014 Sep 26. BMC Bioinformatics. 2014. PMID: 25571995 Free PMC article. No abstract available.

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