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Page 1
Standardized naming of microbiome samples in Genomes OnLine Database.
Mukherjee S, Ovchinnikova G, Stamatis D, Li CT, Chen IA, Kyrpides NC, Reddy TBK. Mukherjee S, et al. Among authors: kyrpides nc. Database (Oxford). 2023 Feb 16;2023:baad001. doi: 10.1093/database/baad001. Database (Oxford). 2023. PMID: 36794865 Free PMC article.
Exploring microbial functional biodiversity at the protein family level-From metagenomic sequence reads to annotated protein clusters.
Baltoumas FA, Karatzas E, Paez-Espino D, Venetsianou NK, Aplakidou E, Oulas A, Finn RD, Ovchinnikov S, Pafilis E, Kyrpides NC, Pavlopoulos GA. Baltoumas FA, et al. Among authors: kyrpides nc. Front Bioinform. 2023 Mar 3;3:1157956. doi: 10.3389/fbinf.2023.1157956. eCollection 2023. Front Bioinform. 2023. PMID: 36959975 Free PMC article. Review.
MjCyc: Rediscovering the pathway-genome landscape of the first sequenced archaeon, Methanocaldococcus (Methanococcus) jannaschii.
Baltsavia I, Stamoulos G, Tziavaras K, Bouas C, Katikaridou I, Dermaris A, Kothari A, Iliopoulos I, Caspi R, Karp PD, Kyrpides NC, Ouzounis CA. Baltsavia I, et al. Among authors: kyrpides nc. iScience. 2024 Dec 5;28(1):111546. doi: 10.1016/j.isci.2024.111546. eCollection 2025 Jan 17. iScience. 2024. PMID: 39834858 Free PMC article.
Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs.
Lee BD, Neri U, Roux S, Wolf YI, Camargo AP, Krupovic M; RNA Virus Discovery Consortium; Simmonds P, Kyrpides N, Gophna U, Dolja VV, Koonin EV. Lee BD, et al. Cell. 2023 Feb 2;186(3):646-661.e4. doi: 10.1016/j.cell.2022.12.039. Epub 2023 Jan 24. Cell. 2023. PMID: 36696902 Free PMC article.
Visualizing metagenomic and metatranscriptomic data: A comprehensive review.
Aplakidou E, Vergoulidis N, Chasapi M, Venetsianou NK, Kokoli M, Panagiotopoulou E, Iliopoulos I, Karatzas E, Pafilis E, Georgakopoulos-Soares I, Kyrpides NC, Pavlopoulos GA, Baltoumas FA. Aplakidou E, et al. Among authors: kyrpides nc. Comput Struct Biotechnol J. 2024 May 3;23:2011-2033. doi: 10.1016/j.csbj.2024.04.060. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 38765606 Free PMC article. Review.
Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Nunn BL, Timmins-Schiffman E, Mudge MC, Plubell DL, Chebli G, Kubanek J, Riffle M, Noble WS, Harvey E, Nunn TA, Rynearson T, Huntemann M, LaButti K, Foster B, Foster B, Roux S, Palaniappan K, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Eloe-Fadrosh EA. Nunn BL, et al. Among authors: kyrpides nc. Sci Data. 2025 Jan 20;12(1):113. doi: 10.1038/s41597-025-04445-7. Sci Data. 2025. PMID: 39833183 Free PMC article. No abstract available.
502 results