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MGnify Genomes: A Resource for Biome-specific Microbial Genome Catalogues.
Gurbich TA, Almeida A, Beracochea M, Burdett T, Burgin J, Cochrane G, Raj S, Richardson L, Rogers AB, Sakharova E, Salazar GA, Finn RD. Gurbich TA, et al. Among authors: raj s. J Mol Biol. 2023 Jul 15;435(14):168016. doi: 10.1016/j.jmb.2023.168016. Epub 2023 Feb 16. J Mol Biol. 2023. PMID: 36806692 Free PMC article.
The InterPro protein families and domains database: 20 years on.
Blum M, Chang HY, Chuguransky S, Grego T, Kandasaamy S, Mitchell A, Nuka G, Paysan-Lafosse T, Qureshi M, Raj S, Richardson L, Salazar GA, Williams L, Bork P, Bridge A, Gough J, Haft DH, Letunic I, Marchler-Bauer A, Mi H, Natale DA, Necci M, Orengo CA, Pandurangan AP, Rivoire C, Sigrist CJA, Sillitoe I, Thanki N, Thomas PD, Tosatto SCE, Wu CH, Bateman A, Finn RD. Blum M, et al. Among authors: raj s. Nucleic Acids Res. 2021 Jan 8;49(D1):D344-D354. doi: 10.1093/nar/gkaa977. Nucleic Acids Res. 2021. PMID: 33156333 Free PMC article.
Pfam: The protein families database in 2021.
Mistry J, Chuguransky S, Williams L, Qureshi M, Salazar GA, Sonnhammer ELL, Tosatto SCE, Paladin L, Raj S, Richardson LJ, Finn RD, Bateman A. Mistry J, et al. Among authors: raj s. Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419. doi: 10.1093/nar/gkaa913. Nucleic Acids Res. 2021. PMID: 33125078 Free PMC article.
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
MacDougall A, Volynkin V, Saidi R, Poggioli D, Zellner H, Hatton-Ellis E, Joshi V, O'Donovan C, Orchard S, Auchincloss AH, Baratin D, Bolleman J, Coudert E, de Castro E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Arighi C, Wang Q, Chen C, Huang H, Garavelli J, Vinayaka CR, Yeh LS, Natale DA, Laiho K, Martin MJ, Renaux A, Pichler K; UniProt Consortium. MacDougall A, et al. Bioinformatics. 2020 Nov 1;36(17):4643-4648. doi: 10.1093/bioinformatics/btaa485. Bioinformatics. 2020. PMID: 32399560 Free PMC article.
Annotation of biologically relevant ligands in UniProtKB using ChEBI.
Coudert E, Gehant S, de Castro E, Pozzato M, Baratin D, Neto T, Sigrist CJA, Redaschi N, Bridge A; UniProt Consortium. Coudert E, et al. Bioinformatics. 2023 Jan 1;39(1):btac793. doi: 10.1093/bioinformatics/btac793. Bioinformatics. 2023. PMID: 36484697 Free PMC article.
Isolation and identification of Rhizospheric and Endophytic Bacteria from Cucumber plants irrigated with wastewater: Exploring their roles in plant growth promotion and disease suppression.
Shreshtha K, Raj S, Pal AK, Tripathi P, Choudhary KK, Mitra D, Rani A, Santos-Villalobos SL, Tripathi V. Shreshtha K, et al. Among authors: raj s. Curr Res Microb Sci. 2024 Jun 23;7:100256. doi: 10.1016/j.crmicr.2024.100256. eCollection 2024. Curr Res Microb Sci. 2024. PMID: 39717060 Free PMC article.
1,391 results