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163 results

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Page 1
Annotation of yellow genes in Diaphorina citri, the vector for Huanglongbing disease.
Massimino C, Vosburg C, Shippy T, Hosmani PS, Flores-Gonzalez M, Mueller LA, Hunter WB, Benoit JB, Brown SJ, D'Elia T, Saha S. Massimino C, et al. Among authors: benoit jb. GigaByte. 2021 May 24;2021:gigabyte20. doi: 10.46471/gigabyte.20. eCollection 2021. GigaByte. 2021. PMID: 36824344 Free PMC article.
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.
Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, Nandyal S, Mahoney R, Van Voorhis J, Dunlevy M, Farrow D, Hunter D, Morgan T, Shore K, Guzman V, Izsak A, Dixon DE, Cridge A, Cano L, Cao X, Jiang H, Leng N, Johnson S, Cantarel BL, Richards S, English A, Shatters RG, Childers C, Chen MJ, Hunter W, Cilia M, Mueller LA, Munoz-Torres M, Nelson D, Poelchau MF, Benoit JB, Wiersma-Koch H, D'Elia T, Brown SJ. Saha S, et al. Among authors: benoit jb. Database (Oxford). 2017 Jan 1;2017:bax032. doi: 10.1093/database/bax032. Database (Oxford). 2017. PMID: 29220441 Free PMC article.
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.
Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, Nandyal S, Mahoney R, Voorhis JV, Dunlevy M, Farrow D, Hunter D, Morgan T, Shore K, Guzman V, Izsak A, Dixon DE, Cridge A, Cano L, Cao X, Jiang H, Leng N, Johnson S, Cantarel BL, Richards S, English A, Shatters RG, Childers C, Chen MJ, Hunter W, Cilia M, Mueller LA, Munoz-Torres M, Nelson D, Poelchau MF, Benoit JB, Wiersma-Koch H, D'Elia T, Brown SJ. Saha S, et al. Among authors: benoit jb. Database (Oxford). 2019 Jan 1;2019:baz035. doi: 10.1093/database/baz035. Database (Oxford). 2019. PMID: 30820572 Free PMC article. No abstract available.
A quick guide for student-driven community genome annotation.
Hosmani PS, Shippy T, Miller S, Benoit JB, Munoz-Torres M, Flores-Gonzalez M, Mueller LA, Wiersma-Koch H, D'Elia T, Brown SJ, Saha S. Hosmani PS, et al. Among authors: benoit jb. PLoS Comput Biol. 2019 Apr 3;15(4):e1006682. doi: 10.1371/journal.pcbi.1006682. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30943207 Free PMC article.
Gene content evolution in the arthropods.
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Thomas GWC, et al. Among authors: benoit jb. Genome Biol. 2020 Jan 23;21(1):15. doi: 10.1186/s13059-019-1925-7. Genome Biol. 2020. PMID: 31969194 Free PMC article.
Annotation of glycolysis, gluconeogenesis, and trehaloneogenesis pathways provide insight into carbohydrate metabolism in the Asian citrus psyllid.
Tamayo B, Kercher K, Vosburg C, Massimino C, Jernigan MR, Hasan DL, Harper D, Mathew A, Adkins S, Shippy T, Hosmani PS, Flores-Gonzalez M, Panitz N, Mueller LA, Hunter WB, Benoit JB, Brown SJ, D'Elia T, Saha S. Tamayo B, et al. Among authors: benoit jb. GigaByte. 2022 Feb 16;2022:gigabyte41. doi: 10.46471/gigabyte.41. eCollection 2022. GigaByte. 2022. PMID: 36824510 Free PMC article.
Annotation of putative circadian rhythm-associated genes in Diaphorina citri (Hemiptera: Liviidae).
Reynolds M, de Oliveira L, Vosburg C, Paris T, Massimino C, Norus J, Ortiz Y, Espino M, Davis N, Masse R, Neiman A, Holcomb R, Gervais K, Kemp M, Hoang M, Shippy TD, Hosmani PS, Flores-Gonzalez M, Pelz-Stelinski K, Qureshi JA, Mueller LA, Hunter WB, Benoit JB, Brown SJ, D'Elia T, Saha S. Reynolds M, et al. Among authors: benoit jb. GigaByte. 2022 Apr 1;2022:gigabyte48. doi: 10.46471/gigabyte.48. eCollection 2022. GigaByte. 2022. PMID: 36824532 Free PMC article.
Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing.
Shippy TD, Hosmani PS, Flores-Gonzalez M, Mann M, Miller S, Weirauch MT, Vosberg C, Massimino C, Tank W, de Oliveira L, Chen C, Hoyt S, Adams R, Adkins S, Bailey ST, Chen X, Davis N, DeLaFlor Y, Espino M, Gervais K, Grace R, Harper D, Hasan DL, Hoang M, Holcomb R, Jernigan MR, Kemp M, Kennedy B, Kercher K, Klaessan S, Kruse A, Licata S, Lu A, Masse R, Mathew A, Michels S, Michels E, Neiman A, Norman S, Norus J, Ortiz Y, Panitz N, Paris T, Perentesis KMR, Perry M, Reynolds M, Sena MM, Tamayo B, Thate A, Vandervoort S, Ventura J, Weis N, Wise T, Shatters RG Jr, Heck M, Benoit JB, Hunter WB, Mueller LA, Brown SJ, D'Elia T, Saha S. Shippy TD, et al. Among authors: benoit jb. Gigascience. 2024 Jan 2;13:giae109. doi: 10.1093/gigascience/giae109. Gigascience. 2024. PMID: 39704701 Free PMC article.
163 results