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Page 1
Single-strand mismatch and damage patterns revealed by single-molecule DNA sequencing.
Liu MH, Costa B, Choi U, Bandler RC, Lassen E, Grońska-Pęski M, Schwing A, Murphy ZR, Rosenkjær D, Picciotto S, Bianchi V, Stengs L, Edwards M, Loh CA, Truong TK, Brand RE, Pastinen T, Wagner JR, Skytte AB, Tabori U, Shoag JE, Evrony GD. Liu MH, et al. Among authors: brand re. bioRxiv [Preprint]. 2023 Feb 19:2023.02.19.526140. doi: 10.1101/2023.02.19.526140. bioRxiv. 2023. Update in: Nature. 2024 Jun;630(8017):752-761. doi: 10.1038/s41586-024-07532-8 PMID: 36824744 Free PMC article. Updated. Preprint.
UNSEG: unsupervised segmentation of cells and their nuclei in complex tissue samples.
Kochetov B, Bell P, Garcia PS, Shalaby AS, Raphael R, Raymond B, Leibowitz BJ, Schoedel K, Brand RM, Brand RE, Yu J, Zhang L, Diergaarde B, Schoen RE, Singhi A, Uttam S. Kochetov B, et al. Among authors: brand re, brand rm. bioRxiv [Preprint]. 2024 Apr 23:2023.11.13.566842. doi: 10.1101/2023.11.13.566842. bioRxiv. 2024. Update in: Commun Biol. 2024 Aug 30;7(1):1062. doi: 10.1038/s42003-024-06714-4 PMID: 38014263 Free PMC article. Updated. Preprint.
DNA mismatch and damage patterns revealed by single-molecule sequencing.
Liu MH, Costa BM, Bianchini EC, Choi U, Bandler RC, Lassen E, Grońska-Pęski M, Schwing A, Murphy ZR, Rosenkjær D, Picciotto S, Bianchi V, Stengs L, Edwards M, Nunes NM, Loh CA, Truong TK, Brand RE, Pastinen T, Wagner JR, Skytte AB, Tabori U, Shoag JE, Evrony GD. Liu MH, et al. Among authors: brand re. Nature. 2024 Jun;630(8017):752-761. doi: 10.1038/s41586-024-07532-8. Epub 2024 Jun 12. Nature. 2024. PMID: 38867045 Free PMC article.
UNSEG: unsupervised segmentation of cells and their nuclei in complex tissue samples.
Kochetov B, Bell PD, Garcia PS, Shalaby AS, Raphael R, Raymond B, Leibowitz BJ, Schoedel K, Brand RM, Brand RE, Yu J, Zhang L, Diergaarde B, Schoen RE, Singhi A, Uttam S. Kochetov B, et al. Among authors: brand re. Commun Biol. 2024 Aug 30;7(1):1062. doi: 10.1038/s42003-024-06714-4. Commun Biol. 2024. PMID: 39215205 Free PMC article.
Immune Microenvironment Profiling of Normal Appearing Colorectal Mucosa Biopsied Over Repeat Patient Visits Reproduciably Separates Lynch Syndrome Patients Based on Their History of Colon Cancer.
Brand RM, Dudley B, Karloski E, Zyhowski A, Raphael R, Pitlor D, Metter EJ, Pai R, Lee K, Brand RE, Uttam S. Brand RM, et al. Among authors: brand re. medRxiv [Preprint]. 2023 Mar 6:2023.03.03.23286594. doi: 10.1101/2023.03.03.23286594. medRxiv. 2023. Update in: Front Oncol. 2023 Aug 11;13:1174831. doi: 10.3389/fonc.2023.1174831 PMID: 36945451 Free PMC article. Updated. Preprint.
Blood-Based microRNA Biomarker Signature of Early-Stage Pancreatic Ductal Adenocarcinoma With Lead-Time Trajectory in Prediagnostic Samples.
Treekitkarnmongkol W, Dai J, Liu S, Sankaran D, Nguyen T, Balasenthil S, Hurd MW, Chen M, Katayama H, Roy-Chowdhuri S, Calin GA, Brand RE, Lampe PD, Hu TY, Maitra A, Koay EJ, Killary AM, Sen S. Treekitkarnmongkol W, et al. Among authors: brand re. Gastro Hep Adv. 2024 Aug 6;3(8):1098-1115. doi: 10.1016/j.gastha.2024.08.002. eCollection 2024. Gastro Hep Adv. 2024. PMID: 39529638 Free PMC article.
Detection of Alternative Lengthening of Telomeres via Chromogenic In Situ Hybridization for the Prognostication of PanNETs and Other Neoplasms.
Heaphy CM, Patel S, Smith K, Wondisford AR, Lynskey ML, O'Sullivan RJ, Fuhrer K, Han X, Seethala RR, Liu TC, Cao D, Ertunc O, Zheng Q, Stojanova M, Zureikat AH, Paniccia A, Lee K, Ongchin MC, Pingpank JF, Zeh HJ, Hogg ME, Geller D, Marsh JW, Brand RE, Chennat JS, Das R, Fasanella KE, Gabbert C, Khalid A, McGrath K, Lennon AM, Sarkaria S, Singh H, Slivka A, Hsu D, Zhang JY, Nacev BA, Nikiforova MN, Wald AI, Vaddi N, De Marzo AM, Singhi AH, Bell PD, Singhi AD. Heaphy CM, et al. Among authors: brand re. Mod Pathol. 2024 Nov 9;38(3):100651. doi: 10.1016/j.modpat.2024.100651. Online ahead of print. Mod Pathol. 2024. PMID: 39522643 Free article.
A rigorous multi-laboratory study of known PDAC biomarkers identifies increased sensitivity and specificity over CA19-9 alone.
Haab B, Qian L, Staal B, Jain M, Fahrmann J, Worthington C, Prosser D, Velokokhatnaya L, Lopez C, Tang R, Hurd MW, Natarajan G, Kumar S, Smith L, Hanash S, Batra SK, Maitra A, Lokshin A, Huang Y, Brand RE. Haab B, et al. Among authors: brand re. Cancer Lett. 2024 Nov 1;604:217245. doi: 10.1016/j.canlet.2024.217245. Epub 2024 Sep 12. Cancer Lett. 2024. PMID: 39276915 Free article.
Pancreatic Cancer Surveillance and Survival of High-Risk Individuals.
Blackford AL, Canto MI, Dbouk M, Hruban RH, Katona BW, Chak A, Brand RE, Syngal S, Farrell J, Kastrinos F, Stoffel EM, Rustgi A, Klein AP, Kamel I, Fishman EK, He J, Burkhart R, Shin EJ, Lennon AM, Goggins M. Blackford AL, et al. Among authors: brand re. JAMA Oncol. 2024 Aug 1;10(8):1087-1096. doi: 10.1001/jamaoncol.2024.1930. JAMA Oncol. 2024. PMID: 38959011 Free PMC article.
249 results