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Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.
Gatto L, Aebersold R, Cox J, Demichev V, Derks J, Emmott E, Franks AM, Ivanov AR, Kelly RT, Khoury L, Leduc A, MacCoss MJ, Nemes P, Perlman DH, Petelski AA, Rose CM, Schoof EM, Van Eyk J, Vanderaa C, Yates JR 3rd, Slavov N. Gatto L, et al. Among authors: perlman dh. Nat Methods. 2023 Mar;20(3):375-386. doi: 10.1038/s41592-023-01785-3. Epub 2023 Mar 2. Nat Methods. 2023. PMID: 36864200 Free PMC article. Review.
Gut microbial β-glucuronidases influence endobiotic homeostasis and are modulated by diverse therapeutics.
Simpson JB, Walker ME, Sekela JJ, Ivey SM, Jariwala PB, Storch CM, Kowalewski ME, Graboski AL, Lietzan AD, Walton WG, Davis KA, Cloer EW, Borlandelli V, Hsiao YC, Roberts LR, Perlman DH, Liang X, Overkleeft HS, Bhatt AP, Lu K, Redinbo MR. Simpson JB, et al. Among authors: perlman dh. Cell Host Microbe. 2024 Jun 12;32(6):925-944.e10. doi: 10.1016/j.chom.2024.04.018. Epub 2024 May 15. Cell Host Microbe. 2024. PMID: 38754417 Free article.
Detection of cell-cell interactions via photocatalytic cell tagging.
Oslund RC, Reyes-Robles T, White CH, Tomlinson JH, Crotty KA, Bowman EP, Chang D, Peterson VM, Li L, Frutos S, Vila-Perelló M, Vlerick D, Cromie K, Perlman DH, Ingale S, Hara SDO, Roberts LR, Piizzi G, Hett EC, Hazuda DJ, Fadeyi OO. Oslund RC, et al. Among authors: perlman dh. Nat Chem Biol. 2022 Aug;18(8):850-858. doi: 10.1038/s41589-022-01044-0. Epub 2022 Jun 2. Nat Chem Biol. 2022. PMID: 35654846
Multiplexed single-cell proteomics using SCoPE2.
Petelski AA, Emmott E, Leduc A, Huffman RG, Specht H, Perlman DH, Slavov N. Petelski AA, et al. Among authors: perlman dh. Nat Protoc. 2021 Dec;16(12):5398-5425. doi: 10.1038/s41596-021-00616-z. Epub 2021 Oct 29. Nat Protoc. 2021. PMID: 34716448 Free PMC article. Review.
Antibiotic Adjuvant Activity Revealed in a Photoaffinity Approach to Determine the Molecular Target of Antipyocyanin Compounds.
Zhang Z, Ortega D, Rush A, Blankenship LR, Cheng ZJ, Moore RE, Tran MLN, Sandoval LG, Aboulhosn K, Watanabe S, Cortez KS, Perlman DH, Semmelhack MF, Miller Conrad LC. Zhang Z, et al. Among authors: perlman dh. ACS Infect Dis. 2021 Mar 12;7(3):535-543. doi: 10.1021/acsinfecdis.0c00160. Epub 2021 Feb 15. ACS Infect Dis. 2021. PMID: 33587590 Free PMC article.
Bisphosphoglycerate mutase controls serine pathway flux via 3-phosphoglycerate.
Oslund RC, Su X, Haugbro M, Kee JM, Esposito M, David Y, Wang B, Ge E, Perlman DH, Kang Y, Muir TW, Rabinowitz JD. Oslund RC, et al. Among authors: perlman dh. Nat Chem Biol. 2017 Oct;13(10):1081-1087. doi: 10.1038/nchembio.2453. Epub 2017 Aug 7. Nat Chem Biol. 2017. PMID: 28805803 Free PMC article.
An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers.
Lau MC, Kieft TL, Kuloyo O, Linage-Alvarez B, van Heerden E, Lindsay MR, Magnabosco C, Wang W, Wiggins JB, Guo L, Perlman DH, Kyin S, Shwe HH, Harris RL, Oh Y, Yi MJ, Purtschert R, Slater GF, Ono S, Wei S, Li L, Sherwood Lollar B, Onstott TC. Lau MC, et al. Among authors: perlman dh. Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):E7927-E7936. doi: 10.1073/pnas.1612244113. Epub 2016 Nov 21. Proc Natl Acad Sci U S A. 2016. PMID: 27872277 Free PMC article.
48 results