Shen Y - Search Results

1

De novo design of modular peptide-binding proteins by superhelical matching.

Wu K, Bai H, Chang YT, Redler R, McNally KE, Sheffler W, Brunette TJ, Hicks DR, Morgan TE, Stevens TJ, Broerman A, Goreshnik I, DeWitt M, Chow CM, Shen Y, Stewart L, Derivery E, Silva DA, Bhabha G, Ekiert DC, Baker D. Wu K, et al. Among authors: shen y. Nature. 2023 Apr;616(7957):581-589. doi: 10.1038/s41586-023-05909-9. Epub 2023 Apr 5. Nature. 2023. PMID: 37020023 Free PMC article.

2

Revisiting the Complexity of and Algorithms for the Graph Traversal Edit Distance and Its Variants.

Qiu Y, Shen Y, Kingsford C. Qiu Y, et al. Among authors: shen y. ArXiv [Preprint]. 2023 Nov 8:arXiv:2305.10577v2. ArXiv. 2023. Update in: Algorithms Mol Biol. 2024 Apr 29;19(1):17. doi: 10.1186/s13015-024-00262-6 PMID: 37292475 Free PMC article. Updated. Preprint.

3

Improving Hi-C contact matrices using genome graphs.

Shen Y, Yu L, Qiu Y, Zhang T, Kingsford C. Shen Y, et al. bioRxiv [Preprint]. 2023 Nov 10:2023.11.08.566275. doi: 10.1101/2023.11.08.566275. bioRxiv. 2023. PMID: 37986943 Free PMC article. Preprint.

4

Data-driven AI system for learning how to run transcript assemblers.

Shen Y, Yan Z, Kingsford C. Shen Y, et al. bioRxiv [Preprint]. 2024 Oct 30:2024.01.25.577290. doi: 10.1101/2024.01.25.577290. bioRxiv. 2024. PMID: 39554123 Free PMC article. Preprint.

5

Revisiting the complexity of and algorithms for the graph traversal edit distance and its variants.

Qiu Y, Shen Y, Kingsford C. Qiu Y, et al. Among authors: shen y. Algorithms Mol Biol. 2024 Apr 29;19(1):17. doi: 10.1186/s13015-024-00262-6. Algorithms Mol Biol. 2024. PMID: 38679703 Free PMC article.

6

Liver-Secreted Extracellular Vesicles Promote Cirrhosis-Associated Skeletal Muscle Injury Through mtDNA-cGAS/STING Axis.

Fan X, Peng Y, Li B, Wang X, Liu Y, Shen Y, Liu G, Zheng Y, Deng Q, Liu J, Yang L. Fan X, et al. Among authors: shen y. Adv Sci (Weinh). 2025 Jan 13:e2410439. doi: 10.1002/advs.202410439. Online ahead of print. Adv Sci (Weinh). 2025. PMID: 39804962

7

Fever in the Trauma Bay: A Marker for Greater Risk of Adverse Outcomes.

Fakhry SM, Shen Y, Berg GM, Dunne JR, Hu P, Hunt DL, McKenney MG, Sheets NW, Sliter RJ, Carrick MM, Garland JM, Orlando A. Fakhry SM, et al. Among authors: shen y. Surg Infect (Larchmt). 2025 Jan 13. doi: 10.1089/sur.2024.184. Online ahead of print. Surg Infect (Larchmt). 2025. PMID: 39804727

8

Antiviral Medications for Treatment of Nonsevere Influenza: A Systematic Review and Network Meta-Analysis.

Gao Y, Zhao Y, Liu M, Luo S, Chen Y, Chen X, Zheng Q, Xu J, Shen Y, Zhao W, Li Z, Huang S, Huang J, Tian J, Guyatt G, Hao Q. Gao Y, et al. Among authors: shen y. JAMA Intern Med. 2025 Jan 13. doi: 10.1001/jamainternmed.2024.7193. Online ahead of print. JAMA Intern Med. 2025. PMID: 39804622

9

Targeting audiences' moral values shapes misinformation sharing.

Abdurahman S, Reimer NK, Golazizian P, Baek E, Shen Y, Trager J, Lulla R, Kaplan J, Parkinson C, Dehghani M. Abdurahman S, et al. Among authors: shen y. J Exp Psychol Gen. 2025 Jan 13. doi: 10.1037/xge0001714. Online ahead of print. J Exp Psychol Gen. 2025. PMID: 39804382

10

Topological features of brain functional networks are reorganized during chronic tinnitus: A graph-theoretical study.

Han S, Shen Y, Wu X, Dai H, Li Y, Liu J, Tao DD. Han S, et al. Among authors: shen y. Eur J Neurosci. 2025 Jan;61(1):e16643. doi: 10.1111/ejn.16643. Eur J Neurosci. 2025. PMID: 39803995

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