Thomas P - Search Results

1

Surveillance of Severe Acute Respiratory Syndrome Coronavirus 2 and Variants Using Digital Droplet Polymerase Chain Reaction at a Large University and Healthcare System in California.

Stafylis C, Pernet O, Hernandez-Tamayo C, Kovacs A, Emerson J, Ward PM, Van Orman S, Gilliland F, Conti D, Weisenhaus M, Ghanem-Uzqueda A, Yepez D, Stellar S, Tadanki AP, Max J, Fottrell H, Ong E, Navarro S, Moses K, Akaolisa M, Hosseini B, Sunesara S, Wang Y, Strum E, Casagrande Y, Arenas N, Williams C, Thomas P, Chu T, Hu H, Klausner JD. Stafylis C, et al. Among authors: thomas p. Open Forum Infect Dis. 2023 Mar 18;10(4):ofad147. doi: 10.1093/ofid/ofad147. eCollection 2023 Apr. Open Forum Infect Dis. 2023. PMID: 37089777 Free PMC article.

2

Nicotinic acetylcholine receptor beta2 subunit gene implicated in a systems-based candidate gene study of smoking cessation.

Conti DV, Lee W, Li D, Liu J, Van Den Berg D, Thomas PD, Bergen AW, Swan GE, Tyndale RF, Benowitz NL, Lerman C; Pharmacogenetics of Nicotine Addiction and Treatment Consortium. Conti DV, et al. Hum Mol Genet. 2008 Sep 15;17(18):2834-48. doi: 10.1093/hmg/ddn181. Epub 2008 Jul 1. Hum Mol Genet. 2008. PMID: 18593715 Free PMC article. Clinical Trial.

3

Large-scale gene function analysis with the PANTHER classification system.

Mi H, Muruganujan A, Casagrande JT, Thomas PD. Mi H, et al. Nat Protoc. 2013 Aug;8(8):1551-66. doi: 10.1038/nprot.2013.092. Epub 2013 Jul 18. Nat Protoc. 2013. PMID: 23868073 Free PMC article.

4

Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0).

Mi H, Muruganujan A, Huang X, Ebert D, Mills C, Guo X, Thomas PD. Mi H, et al. Nat Protoc. 2019 Mar;14(3):703-721. doi: 10.1038/s41596-019-0128-8. Epub 2019 Feb 25. Nat Protoc. 2019. PMID: 30804569 Free PMC article.

5

Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation.

Liu Z, Mushayahama T, Queme B, Ebert D, Muruganujan A, Mills C, Thomas PD, Mi H. Liu Z, et al. Nucleic Acids Res. 2022 Jul 5;50(W1):W57-W65. doi: 10.1093/nar/gkac418. Nucleic Acids Res. 2022. PMID: 35640593 Free PMC article.

6

A systems biology network model for genetic association studies of nicotine addiction and treatment.

Thomas PD, Mi H, Swan GE, Lerman C, Benowitz N, Tyndale RF, Bergen AW, Conti DV; Pharmacogenetics of Nicotine Addiction and Treatment Consortium. Thomas PD, et al. Pharmacogenet Genomics. 2009 Jul;19(7):538-51. doi: 10.1097/FPC.0b013e32832e2ced. Pharmacogenet Genomics. 2009. PMID: 19525886 Free PMC article.

7

PANTHER-PSEP: predicting disease-causing genetic variants using position-specific evolutionary preservation.

Tang H, Thomas PD. Tang H, et al. Bioinformatics. 2016 Jul 15;32(14):2230-2. doi: 10.1093/bioinformatics/btw222. Epub 2016 May 18. Bioinformatics. 2016. PMID: 27193693

8

Tools for Predicting the Functional Impact of Nonsynonymous Genetic Variation.

Tang H, Thomas PD. Tang H, et al. Genetics. 2016 Jun;203(2):635-47. doi: 10.1534/genetics.116.190033. Genetics. 2016. PMID: 27270698 Free PMC article. Review.

9

PANTHER: Making genome-scale phylogenetics accessible to all.

Thomas PD, Ebert D, Muruganujan A, Mushayahama T, Albou LP, Mi H. Thomas PD, et al. Protein Sci. 2022 Jan;31(1):8-22. doi: 10.1002/pro.4218. Epub 2021 Nov 25. Protein Sci. 2022. PMID: 34717010 Free PMC article. Review.

10

GO functional similarity clustering depends on similarity measure, clustering method, and annotation completeness.

Liu M, Thomas PD. Liu M, et al. BMC Bioinformatics. 2019 Mar 27;20(1):155. doi: 10.1186/s12859-019-2752-2. BMC Bioinformatics. 2019. PMID: 30917779 Free PMC article.

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