Shooshtari P - Search Results

1

The EBV Gastric Cancer Resource (EBV-GCR): A Suite of Tools for Investigating EBV-Associated Human Gastric Carcinogenesis.

Salnikov MY, Wang E, Christensen E, Prusinkiewicz MA, Shooshtari P, Mymryk JS. Salnikov MY, et al. Among authors: shooshtari p. Viruses. 2023 Mar 27;15(4):853. doi: 10.3390/v15040853. Viruses. 2023. PMID: 37112833 Free PMC article.

2

CReSCENT: CanceR Single Cell ExpressioN Toolkit.

Mohanraj S, Díaz-Mejía JJ, Pham MD, Elrick H, Husić M, Rashid S, Luo P, Bal P, Lu K, Patel S, Mahalanabis A, Naidas A, Christensen E, Croucher D, Richards LM, Shooshtari P, Brudno M, Ramani AK, Pugh TJ. Mohanraj S, et al. Among authors: shooshtari p. Nucleic Acids Res. 2020 Jul 2;48(W1):W372-W379. doi: 10.1093/nar/gkaa437. Nucleic Acids Res. 2020. PMID: 32479601 Free PMC article.

3

TMExplorer: A tumour microenvironment single-cell RNAseq database and search tool.

Christensen E, Naidas A, Chen D, Husic M, Shooshtari P. Christensen E, et al. Among authors: shooshtari p. PLoS One. 2022 Sep 9;17(9):e0272302. doi: 10.1371/journal.pone.0272302. eCollection 2022. PLoS One. 2022. PMID: 36084081 Free PMC article.

4

Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets.

Mahalanabis A, Turinsky AL, Husić M, Christensen E, Luo P, Naidas A, Brudno M, Pugh T, Ramani AK, Shooshtari P. Mahalanabis A, et al. Among authors: shooshtari p. Comput Struct Biotechnol J. 2022 Oct 26;20:6375-6387. doi: 10.1016/j.csbj.2022.10.029. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36420149 Free PMC article.

5

Evaluation of single-cell RNAseq labelling algorithms using cancer datasets.

Christensen E, Luo P, Turinsky A, Husić M, Mahalanabis A, Naidas A, Diaz-Mejia JJ, Brudno M, Pugh T, Ramani A, Shooshtari P. Christensen E, et al. Among authors: shooshtari p. Brief Bioinform. 2023 Jan 19;24(1):bbac561. doi: 10.1093/bib/bbac561. Brief Bioinform. 2023. PMID: 36585784 Free PMC article.

6

Leveraging Public Single-Cell and Bulk Transcriptomic Datasets to Delineate MAIT Cell Roles and Phenotypic Characteristics in Human Malignancies.

Yao T, Shooshtari P, Haeryfar SMM. Yao T, et al. Among authors: shooshtari p. Front Immunol. 2020 Jul 31;11:1691. doi: 10.3389/fimmu.2020.01691. eCollection 2020. Front Immunol. 2020. PMID: 32849590 Free PMC article.

7

Developing OCHROdb, a comprehensive quality checked database of open chromatin regions from sequencing data.

Shooshtari P, Feng S, Nelakuditi V, Asakereh R, Hosseini Naghavi N, Foong J, Brudno M, Cotsapas C. Shooshtari P, et al. Sci Rep. 2023 May 18;13(1):8106. doi: 10.1038/s41598-022-26791-x. Sci Rep. 2023. PMID: 37202401 Free PMC article.

8

Analysis of TERT Isoforms across TCGA, GTEx and CCLE Datasets.

Subasri M, Shooshtari P, Watson AJ, Betts DH. Subasri M, et al. Among authors: shooshtari p. Cancers (Basel). 2021 Apr 13;13(8):1853. doi: 10.3390/cancers13081853. Cancers (Basel). 2021. PMID: 33924498 Free PMC article.

9

Single-Cell Chromatin Accessibility Data Combined with GWAS Improves Detection of Relevant Cell Types in 59 Complex Phenotypes.

Das AC, Foroutan A, Qian B, Hosseini Naghavi N, Shabani K, Shooshtari P. Das AC, et al. Among authors: shooshtari p. Int J Mol Sci. 2022 Sep 28;23(19):11456. doi: 10.3390/ijms231911456. Int J Mol Sci. 2022. PMID: 36232752 Free PMC article.

10

Integrative Genetic and Epigenetic Analysis Uncovers Regulatory Mechanisms of Autoimmune Disease.

Shooshtari P, Huang H, Cotsapas C. Shooshtari P, et al. Am J Hum Genet. 2017 Jul 6;101(1):75-86. doi: 10.1016/j.ajhg.2017.06.001. Am J Hum Genet. 2017. PMID: 28686857 Free PMC article.

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