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Impact of Variable RNA-Sequencing Depth on Gene Expression Signatures and Target Compound Robustness: Case Study Examining Brain Tumor (Glioma) Disease Progression.
Stupnikov A, O'Reilly PG, McInerney CE, Roddy AC, Dunne PD, Gilmore A, Ellis HP, Flannery T, Healy E, McIntosh SA, Savage K, Kurian KM, Emmert-Streib F, Prise KM, Salto-Tellez M, McArt DG. Stupnikov A, et al. Among authors: mcinerney ce. JCO Precis Oncol. 2018 Sep 13;2:PO.18.00014. doi: 10.1200/PO.18.00014. JCO Precis Oncol. 2018. PMID: 30324181 Free PMC article.
Robustness of differential gene expression analysis of RNA-seq.
Stupnikov A, McInerney CE, Savage KI, McIntosh SA, Emmert-Streib F, Kennedy R, Salto-Tellez M, Prise KM, McArt DG. Stupnikov A, et al. Among authors: mcinerney ce. Comput Struct Biotechnol J. 2021 May 26;19:3470-3481. doi: 10.1016/j.csbj.2021.05.040. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34188784 Free PMC article.
A bespoke target selection tool to guide biomarker discovery in tubo-ovarian cancer.
Beirne JP, Gilmore A, McInerney CE, Roddy A, Glenn McCluggage W, Harley IJG, Abdullah Alvi M, Prise KM, McArt DG, Mullan PB. Beirne JP, et al. Among authors: mcinerney ce. Comput Struct Biotechnol J. 2022 Jun 17;20:3359-3371. doi: 10.1016/j.csbj.2022.06.016. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35832628 Free PMC article.
13 results