Zeitlinger J - Search Results

1

Co-option of the trichome-forming network initiated the evolution of a morphological novelty in Drosophila eugracilis.

Rice G, Gaitán-Escudero T, Charles-Obi K, Zeitlinger J, Rebeiz M. Rice G, et al. Among authors: zeitlinger j. Curr Biol. 2024 Nov 18;34(22):5284-5294.e3. doi: 10.1016/j.cub.2024.09.073. Epub 2024 Oct 25. Curr Biol. 2024. PMID: 39461339

2

Gene regulatory network co-option is sufficient to induce a morphological novelty in Drosophila.

Rice G, Gaitan-Escudero T, Charles-Obi K, Zeitlinger J, Rebeiz M. Rice G, et al. Among authors: zeitlinger j. bioRxiv [Preprint]. 2024 Mar 27:2024.03.22.584840. doi: 10.1101/2024.03.22.584840. bioRxiv. 2024. Update in: Curr Biol. 2024 Nov 18;34(22):5284-5294.e3. doi: 10.1016/j.cub.2024.09.073 PMID: 38585823 Free PMC article. Updated. Preprint.

3

The multi-lineage transcription factor ISL1 controls cardiomyocyte cell fate through interaction with NKX2.5.

Maven BEJ, Gifford CA, Weilert M, Gonzalez-Teran B, Hüttenhain R, Pelonero A, Ivey KN, Samse-Knapp K, Kwong W, Gordon D, McGregor M, Nishino T, Okorie E, Rossman S, Costa MW, Krogan NJ, Zeitlinger J, Srivastava D. Maven BEJ, et al. Among authors: zeitlinger j. Stem Cell Reports. 2023 Nov 14;18(11):2138-2153. doi: 10.1016/j.stemcr.2023.09.014. Epub 2023 Oct 19. Stem Cell Reports. 2023. PMID: 37863045 Free PMC article.

4

Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development.

Ramalingam V, Yu X, Slaughter BD, Unruh JR, Brennan KJ, Onyshchenko A, Lange JJ, Natarajan M, Buck M, Zeitlinger J. Ramalingam V, et al. Among authors: zeitlinger j. Nat Commun. 2023 Sep 21;14(1):5862. doi: 10.1038/s41467-023-41408-1. Nat Commun. 2023. PMID: 37735176 Free PMC article.

5

Short tandem repeats bind transcription factors to tune eukaryotic gene expression.

Horton CA, Alexandari AM, Hayes MGB, Marklund E, Schaepe JM, Aditham AK, Shah N, Suzuki PH, Shrikumar A, Afek A, Greenleaf WJ, Gordân R, Zeitlinger J, Kundaje A, Fordyce PM. Horton CA, et al. Among authors: zeitlinger j. Science. 2023 Sep 22;381(6664):eadd1250. doi: 10.1126/science.add1250. Epub 2023 Sep 22. Science. 2023. PMID: 37733848

6

Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation.

Brennan KJ, Weilert M, Krueger S, Pampari A, Liu HY, Yang AWH, Morrison JA, Hughes TR, Rushlow CA, Kundaje A, Zeitlinger J. Brennan KJ, et al. Among authors: zeitlinger j. Dev Cell. 2023 Oct 9;58(19):1898-1916.e9. doi: 10.1016/j.devcel.2023.07.007. Epub 2023 Aug 8. Dev Cell. 2023. PMID: 37557175 Free PMC article.

7

De novo distillation of thermodynamic affinity from deep learning regulatory sequence models of in vivo protein-DNA binding.

Alexandari AM, Horton CA, Shrikumar A, Shah N, Li E, Weilert M, Pufall MA, Zeitlinger J, Fordyce PM, Kundaje A. Alexandari AM, et al. Among authors: zeitlinger j. bioRxiv [Preprint]. 2023 May 11:2023.05.11.540401. doi: 10.1101/2023.05.11.540401. bioRxiv. 2023. PMID: 37214836 Free PMC article. Preprint.

8

Emerging questions in transcriptional regulation.

Nora EP, Aerts S, Wittkopp PJ, Bussemaker HJ, Bulyk M, Sinha S, Zeitlinger J, Crocker J, Fuxman Bass JI. Nora EP, et al. Among authors: zeitlinger j. Cell Syst. 2023 Apr 19;14(4):247-251. doi: 10.1016/j.cels.2023.03.005. Cell Syst. 2023. PMID: 37080160 Free article.

9

Off the deep end: What can deep learning do for the gene expression field?

Raicu AM, Fay JC, Rohner N, Zeitlinger J, Arnosti DN. Raicu AM, et al. Among authors: zeitlinger j. J Biol Chem. 2023 Jan;299(1):102760. doi: 10.1016/j.jbc.2022.102760. Epub 2022 Nov 30. J Biol Chem. 2023. PMID: 36462664 Free PMC article.

10

The SAGA core module is critical during Drosophila oogenesis and is broadly recruited to promoters.

Soffers JHM, Alcantara SG, Li X, Shao W, Seidel CW, Li H, Zeitlinger J, Abmayr SM, Workman JL. Soffers JHM, et al. Among authors: zeitlinger j. PLoS Genet. 2021 Nov 22;17(11):e1009668. doi: 10.1371/journal.pgen.1009668. eCollection 2021 Nov. PLoS Genet. 2021. PMID: 34807910 Free PMC article.

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