Vuillemot R - Search Results

1

Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM.

Herreros D, Krieger JM, Fonseca Y, Conesa P, Harastani M, Vuillemot R, Hamitouche I, Serrano Gutiérrez R, Gragera M, Melero R, Jonic S, Carazo JM, Sorzano COS. Herreros D, et al. Among authors: vuillemot r. Acta Crystallogr D Struct Biol. 2023 Jul 1;79(Pt 7):569-584. doi: 10.1107/S2059798323004497. Epub 2023 Jun 16. Acta Crystallogr D Struct Biol. 2023. PMID: 37326585 Free PMC article.

2

NMMD: Efficient Cryo-EM Flexible Fitting Based on Simultaneous Normal Mode and Molecular Dynamics atomic displacements.

Vuillemot R, Miyashita O, Tama F, Rouiller I, Jonic S. Vuillemot R, et al. J Mol Biol. 2022 Apr 15;434(7):167483. doi: 10.1016/j.jmb.2022.167483. Epub 2022 Feb 9. J Mol Biol. 2022. PMID: 35150654

3

In silico prediction, characterization, docking studies and molecular dynamics simulation of human p97 in complex with p37 cofactor.

Mirzadeh A, Kobakhidze G, Vuillemot R, Jonic S, Rouiller I. Mirzadeh A, et al. Among authors: vuillemot r. BMC Mol Cell Biol. 2022 Sep 10;23(1):39. doi: 10.1186/s12860-022-00437-2. BMC Mol Cell Biol. 2022. PMID: 36088301 Free PMC article.

4

ContinuousFlex: Software package for analyzing continuous conformational variability of macromolecules in cryo electron microscopy and tomography data.

Harastani M, Vuillemot R, Hamitouche I, Moghadam NB, Jonic S. Harastani M, et al. Among authors: vuillemot r. J Struct Biol. 2022 Dec;214(4):107906. doi: 10.1016/j.jsb.2022.107906. Epub 2022 Oct 13. J Struct Biol. 2022. PMID: 36244611

5

MDSPACE: Extracting Continuous Conformational Landscapes from Cryo-EM Single Particle Datasets Using 3D-to-2D Flexible Fitting based on Molecular Dynamics Simulation.

Vuillemot R, Mirzaei A, Harastani M, Hamitouche I, Fréchin L, Klaholz BP, Miyashita O, Tama F, Rouiller I, Jonic S. Vuillemot R, et al. J Mol Biol. 2023 May 1;435(9):167951. doi: 10.1016/j.jmb.2023.167951. Epub 2023 Jan 10. J Mol Biol. 2023. PMID: 36638910

6

MDTOMO method for continuous conformational variability analysis in cryo electron subtomograms based on molecular dynamics simulations.

Vuillemot R, Rouiller I, Jonić S. Vuillemot R, et al. Sci Rep. 2023 Jun 30;13(1):10596. doi: 10.1038/s41598-023-37037-9. Sci Rep. 2023. PMID: 37391578 Free PMC article.

7

Structure and conformational variability of the HER2-trastuzumab-pertuzumab complex.

Ruedas R, Vuillemot R, Tubiana T, Winter JM, Pieri L, Arteni AA, Samson C, Jonic S, Mathieu M, Bressanelli S. Ruedas R, et al. Among authors: vuillemot r. J Struct Biol. 2024 Jun;216(2):108095. doi: 10.1016/j.jsb.2024.108095. Epub 2024 May 7. J Struct Biol. 2024. PMID: 38723875 Free article.

8

Analysis of the Conformational Landscape of the N-Domains of the AAA ATPase p97: Disentangling the Continuous Conformational Variability in Partially Symmetrical Complexes.

Valimehr S, Vuillemot R, Kazemi M, Jonic S, Rouiller I. Valimehr S, et al. Among authors: vuillemot r. Int J Mol Sci. 2024 Mar 16;25(6):3371. doi: 10.3390/ijms25063371. Int J Mol Sci. 2024. PMID: 38542345 Free PMC article.

9

MDSPACE and MDTOMO Software for Extracting Continuous Conformational Landscapes from Datasets of Single Particle Images and Subtomograms Based on Molecular Dynamics Simulations: Latest Developments in ContinuousFlex Software Package.

Vuillemot R, Harastani M, Hamitouche I, Jonic S. Vuillemot R, et al. Int J Mol Sci. 2023 Dec 19;25(1):20. doi: 10.3390/ijms25010020. Int J Mol Sci. 2023. PMID: 38203192 Free PMC article.

10

Designing for Visualization in Motion: Embedding Visualizations in Swimming Videos.

Yao L, Vuillemot R, Bezerianos A, Isenberg P. Yao L, et al. Among authors: vuillemot r. IEEE Trans Vis Comput Graph. 2024 Mar;30(3):1821-1836. doi: 10.1109/TVCG.2023.3341990. Epub 2024 Jan 30. IEEE Trans Vis Comput Graph. 2024. PMID: 38090861

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