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Creation of an albino squid line by CRISPR-Cas9 and its application for in vivo functional imaging of neural activity.
Ahuja N, Hwaun E, Pungor JR, Rafiq R, Nemes S, Sakmar T, Vogt MA, Grasse B, Diaz Quiroz J, Montague TG, Null RW, Dallis DN, Gavriouchkina D, Marletaz F, Abbo L, Rokhsar DS, Niell CM, Soltesz I, Albertin CB, Rosenthal JJC. Ahuja N, et al. Among authors: rokhsar ds. Curr Biol. 2023 Jul 10;33(13):2774-2783.e5. doi: 10.1016/j.cub.2023.05.066. Epub 2023 Jun 20. Curr Biol. 2023. PMID: 37343558 Free article.
The hagfish genome and the evolution of vertebrates.
Marlétaz F, Timoshevskaya N, Timoshevskiy V, Simakov O, Parey E, Gavriouchkina D, Suzuki M, Kubokawa K, Brenner S, Smith J, Rokhsar DS. Marlétaz F, et al. Among authors: rokhsar ds. bioRxiv [Preprint]. 2023 Apr 18:2023.04.17.537254. doi: 10.1101/2023.04.17.537254. bioRxiv. 2023. Update in: Nature. 2024 Mar;627(8005):811-820. doi: 10.1038/s41586-024-07070-3. PMID: 37131617 Free PMC article. Updated. Preprint.
Chromosome-level genome assemblies of 2 hemichordates provide new insights into deuterostome origin and chromosome evolution.
Lin CY, Marlétaz F, Pérez-Posada A, Martínez-García PM, Schloissnig S, Peluso P, Conception GT, Bump P, Chen YC, Chou C, Lin CY, Fan TP, Tsai CT, Gómez Skarmeta JL, Tena JJ, Lowe CJ, Rank DR, Rokhsar DS, Yu JK, Su YH. Lin CY, et al. Among authors: rokhsar ds. PLoS Biol. 2024 Jun 3;22(6):e3002661. doi: 10.1371/journal.pbio.3002661. eCollection 2024 Jun. PLoS Biol. 2024. PMID: 38829909 Free PMC article.
Cephalopod behaviour.
Gutnick T, Rokhsar DS, Kuba MJ. Gutnick T, et al. Among authors: rokhsar ds. Curr Biol. 2023 Oct 23;33(20):R1083-R1086. doi: 10.1016/j.cub.2023.08.094. Curr Biol. 2023. PMID: 37875088 Free article.
CRISPR-Cas9-mediated knockout of CYP79D1 and CYP79D2 in cassava attenuates toxic cyanogen production.
Gomez MA, Berkoff KC, Gill BK, Iavarone AT, Lieberman SE, Ma JM, Schultink A, Karavolias NG, Wyman SK, Chauhan RD, Taylor NJ, Staskawicz BJ, Cho MJ, Rokhsar DS, Lyons JB. Gomez MA, et al. Among authors: rokhsar ds. Front Plant Sci. 2023 Mar 17;13:1079254. doi: 10.3389/fpls.2022.1079254. eCollection 2022. Front Plant Sci. 2023. PMID: 37007603 Free PMC article.
Pluripotency of a founding field: rebranding developmental biology.
Rogers CD, Amemiya C, Arur S, Babonis L, Barresi M, Bartlett M, Behringer R, Benham-Pyle B, Bergmann D, Blackman B, Brown CT, Browne B, Camacho J, Chabu CY, Chow I, Cleaver O, Cool J, Dennis MY, Dickinson AJ, Di Talia S, Frank M, Gillmor S, Haag ES, Hariharan I, Harland R, Husbands A, Jerome-Majewska L, Koenig K, Labonne C, Layden M, Lowe C, Mani M, Martik M, McKown K, Moens C, Mosimann C, Onyenedum J, Reed R, Rivera A, Rokhsar D, Royer L, Rutaganira F, Shahan R, Sinha N, Swalla B, Van Norman JM, Wagner DE, Wikramanayake A, Zebell S, Brady SM. Rogers CD, et al. Development. 2024 Feb 1;151(3):dev202342. doi: 10.1242/dev.202342. Epub 2024 Feb 12. Development. 2024. PMID: 38345109
The hagfish genome and the evolution of vertebrates.
Marlétaz F, Timoshevskaya N, Timoshevskiy VA, Parey E, Simakov O, Gavriouchkina D, Suzuki M, Kubokawa K, Brenner S, Smith JJ, Rokhsar DS. Marlétaz F, et al. Among authors: rokhsar ds. Nature. 2024 Mar;627(8005):811-820. doi: 10.1038/s41586-024-07070-3. Epub 2024 Jan 23. Nature. 2024. PMID: 38262590 Free PMC article.
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs.
Bredeson JV, Mudd AB, Medina-Ruiz S, Mitros T, Smith OK, Miller KE, Lyons JB, Batra SS, Park J, Berkoff KC, Plott C, Grimwood J, Schmutz J, Aguirre-Figueroa G, Khokha MK, Lane M, Philipp I, Laslo M, Hanken J, Kerdivel G, Buisine N, Sachs LM, Buchholz DR, Kwon T, Smith-Parker H, Gridi-Papp M, Ryan MJ, Denton RD, Malone JH, Wallingford JB, Straight AF, Heald R, Hockemeyer D, Harland RM, Rokhsar DS. Bredeson JV, et al. Among authors: rokhsar ds. Nat Commun. 2024 Jan 17;15(1):579. doi: 10.1038/s41467-023-43012-9. Nat Commun. 2024. PMID: 38233380 Free PMC article.
Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources.
Ferguson ME, Eyles RP, Garcia-Oliveira AL, Kapinga F, Masumba EA, Amuge T, Bredeson JV, Rokhsar DS, Lyons JB, Shah T, Rounsley S, Mkamilo G. Ferguson ME, et al. Among authors: rokhsar ds. Front Plant Sci. 2023 Nov 3;14:1270963. doi: 10.3389/fpls.2023.1270963. eCollection 2023. Front Plant Sci. 2023. PMID: 38023930 Free PMC article.
Tracing cancer evolution and heterogeneity using Hi-C.
Erdmann-Pham DD, Batra SS, Turkalo TK, Durbin J, Blanchette M, Yeh I, Shain H, Bastian BC, Song YS, Rokhsar DS, Hockemeyer D. Erdmann-Pham DD, et al. Among authors: rokhsar ds. Nat Commun. 2023 Nov 6;14(1):7111. doi: 10.1038/s41467-023-42651-2. Nat Commun. 2023. PMID: 37932252 Free PMC article.
159 results