Kapp JD - Search Results

1

A computational approach for positive genetic identification and relatedness detection from low-coverage shotgun sequencing data.

Nguyen R, Kapp JD, Sacco S, Myers SP, Green RE. Nguyen R, et al. Among authors: kapp jd. J Hered. 2023 Aug 23;114(5):504-512. doi: 10.1093/jhered/esad041. J Hered. 2023. PMID: 37381815 Free PMC article.

2

Stable C and N isotope analysis of hair suggest undernourishment as a factor in the death of a mummified girl from late 19th century San Francisco, CA.

Eerkens JW, Hull B, Goodman J, Evoy A, Kapp JD, Hussain S, Green RE. Eerkens JW, et al. Among authors: kapp jd. PLoS One. 2017 Sep 18;12(9):e0184921. doi: 10.1371/journal.pone.0184921. eCollection 2017. PLoS One. 2017. PMID: 28922420 Free PMC article.

3

Ancient DNA Resolves the History of Tetragnatha (Araneae, Tetragnathidae) Spiders on Rapa Nui.

Cotoras DD, Murray GGR, Kapp J, Gillespie RG, Griswold C, Simison WB, Green RE, Shapiro B. Cotoras DD, et al. Genes (Basel). 2017 Dec 20;8(12):403. doi: 10.3390/genes8120403. Genes (Basel). 2017. PMID: 29261166 Free PMC article.

4

Genomic Evidence of Widespread Admixture from Polar Bears into Brown Bears during the Last Ice Age.

Cahill JA, Heintzman PD, Harris K, Teasdale MD, Kapp J, Soares AER, Stirling I, Bradley D, Edwards CJ, Graim K, Kisleika AA, Malev AV, Monaghan N, Green RE, Shapiro B. Cahill JA, et al. Mol Biol Evol. 2018 May 1;35(5):1120-1129. doi: 10.1093/molbev/msy018. Mol Biol Evol. 2018. PMID: 29471451 Free article.

5

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos.

Troll CJ, Kapp J, Rao V, Harkins KM, Cole C, Naughton C, Morgan JM, Shapiro B, Green RE. Troll CJ, et al. BMC Genomics. 2019 Dec 27;20(1):1023. doi: 10.1186/s12864-019-6355-0. BMC Genomics. 2019. PMID: 31881841 Free PMC article.

6

A novel NGS library preparation method to characterize native termini of fragmented DNA.

Harkins KM, Schaefer NK, Troll CJ, Rao V, Kapp J, Naughton C, Shapiro B, Green RE. Harkins KM, et al. Nucleic Acids Res. 2020 May 7;48(8):e47. doi: 10.1093/nar/gkaa128. Nucleic Acids Res. 2020. PMID: 32112100 Free PMC article.

7

A Fast and Efficient Single-stranded Genomic Library Preparation Method Optimized for Ancient DNA.

Kapp JD, Green RE, Shapiro B. Kapp JD, et al. J Hered. 2021 May 24;112(3):241-249. doi: 10.1093/jhered/esab012. J Hered. 2021. PMID: 33768239 Free PMC article.

8

A polar bear paleogenome reveals extensive ancient gene flow from polar bears into brown bears.

Wang MS, Murray GGR, Mann D, Groves P, Vershinina AO, Supple MA, Kapp JD, Corbett-Detig R, Crump SE, Stirling I, Laidre KL, Kunz M, Dalén L, Green RE, Shapiro B. Wang MS, et al. Among authors: kapp jd. Nat Ecol Evol. 2022 Jul;6(7):936-944. doi: 10.1038/s41559-022-01753-8. Epub 2022 Jun 16. Nat Ecol Evol. 2022. PMID: 35711062

9

A method to generate capture baits for targeted sequencing.

Sundararaman B, Vershinina AO, Hershauer S, Kapp JD, Dunn S, Shapiro B, Green RE. Sundararaman B, et al. Among authors: kapp jd. Nucleic Acids Res. 2023 Jul 21;51(13):e69. doi: 10.1093/nar/gkad460. Nucleic Acids Res. 2023. PMID: 37260085 Free PMC article.

10

Limited genomic signatures of population collapse in the critically endangered black abalone (Haliotis cracherodii).

Wooldridge B, Orland C, Enbody E, Escalona M, Mirchandani C, Corbett-Detig R, Kapp JD, Fletcher N, Cox-Ammann K, Raimondi P, Shapiro B. Wooldridge B, et al. Among authors: kapp jd. Mol Ecol. 2024 Apr 29:e17362. doi: 10.1111/mec.17362. Online ahead of print. Mol Ecol. 2024. PMID: 38682494 Free PMC article.

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