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Page 1
Terabase-Scale Coassembly of a Tropical Soil Microbiome.
Riley R, Bowers RM, Camargo AP, Campbell A, Egan R, Eloe-Fadrosh EA, Foster B, Hofmeyr S, Huntemann M, Kellom M, Kimbrel JA, Oliker L, Yelick K, Pett-Ridge J, Salamov A, Varghese NJ, Clum A. Riley R, et al. Among authors: varghese nj. Microbiol Spectr. 2023 Aug 17;11(4):e0020023. doi: 10.1128/spectrum.00200-23. Epub 2023 Jun 13. Microbiol Spectr. 2023. PMID: 37310219 Free PMC article.
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes.
Seshadri R, Roux S, Huber KJ, Wu D, Yu S, Udwary D, Call L, Nayfach S, Hahnke RL, Pukall R, White JR, Varghese NJ, Webb C, Palaniappan K, Reimer LC, Sardà J, Bertsch J, Mukherjee S, Reddy TBK, Hajek PP, Huntemann M, Chen IA, Spunde A, Clum A, Shapiro N, Wu ZY, Zhao Z, Zhou Y, Evtushenko L, Thijs S, Stevens V, Eloe-Fadrosh EA, Mouncey NJ, Yoshikuni Y, Whitman WB, Klenk HP, Woyke T, Göker M, Kyrpides NC, Ivanova NN. Seshadri R, et al. Among authors: varghese nj. Cell Genom. 2022 Nov 11;2(12):100213. doi: 10.1016/j.xgen.2022.100213. eCollection 2022 Dec 14. Cell Genom. 2022. PMID: 36778052 Free PMC article.
The IMG/M data management and analysis system v.7: content updates and new features.
Chen IA, Chu K, Palaniappan K, Ratner A, Huang J, Huntemann M, Hajek P, Ritter SJ, Webb C, Wu D, Varghese NJ, Reddy TBK, Mukherjee S, Ovchinnikova G, Nolan M, Seshadri R, Roux S, Visel A, Woyke T, Eloe-Fadrosh EA, Kyrpides NC, Ivanova NN. Chen IA, et al. Among authors: varghese nj. Nucleic Acids Res. 2023 Jan 6;51(D1):D723-D732. doi: 10.1093/nar/gkac976. Nucleic Acids Res. 2023. PMID: 36382399 Free PMC article.
Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.
Hu B, Canon S, Eloe-Fadrosh EA, Anubhav, Babinski M, Corilo Y, Davenport K, Duncan WD, Fagnan K, Flynn M, Foster B, Hays D, Huntemann M, Jackson EKP, Kelliher J, Li PE, Lo CC, Mans D, McCue LA, Mouncey N, Mungall CJ, Piehowski PD, Purvine SO, Smith M, Varghese NJ, Winston D, Xu Y, Chain PSG. Hu B, et al. Among authors: varghese nj. Front Bioinform. 2022 Jan 17;1:826370. doi: 10.3389/fbinf.2021.826370. eCollection 2021. Front Bioinform. 2022. PMID: 36303775 Free PMC article. Review.
Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota.
Ostrowski MP, La Rosa SL, Kunath BJ, Robertson A, Pereira G, Hagen LH, Varghese NJ, Qiu L, Yao T, Flint G, Li J, McDonald SP, Buttner D, Pudlo NA, Schnizlein MK, Young VB, Brumer H, Schmidt TM, Terrapon N, Lombard V, Henrissat B, Hamaker B, Eloe-Fadrosh EA, Tripathi A, Pope PB, Martens EC. Ostrowski MP, et al. Among authors: varghese nj. Nat Microbiol. 2022 Apr;7(4):556-569. doi: 10.1038/s41564-022-01093-0. Epub 2022 Apr 1. Nat Microbiol. 2022. PMID: 35365790 Free PMC article.
Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria.
Pudlo NA, Pereira GV, Parnami J, Cid M, Markert S, Tingley JP, Unfried F, Ali A, Varghese NJ, Kim KS, Campbell A, Urs K, Xiao Y, Adams R, Martin D, Bolam DN, Becher D, Eloe-Fadrosh EA, Schmidt TM, Abbott DW, Schweder T, Hehemann JH, Martens EC. Pudlo NA, et al. Among authors: varghese nj. Cell Host Microbe. 2022 Mar 9;30(3):314-328.e11. doi: 10.1016/j.chom.2022.02.001. Epub 2022 Mar 2. Cell Host Microbe. 2022. PMID: 35240043 Free PMC article.
22 results