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Page 1
A functional microbiome catalog crowdsourced from North American rivers.
Borton MA, McGivern BB, Willi KR, Woodcroft BJ, Mosier AC, Singleton DM, Bambakidis T, Pelly A, Liu F, Edirisinghe JN, Faria JP, Leleiwi I, Daly RA, Goldman AE, Wilkins MJ, Hall EK, Pennacchio C, Roux S, Eloe-Fadrosh EA, Good SP, Sullivan MB, Henry CS, Wood-Charlson EM, Ross MRV, Miller CS, Crump BC, Stegen JC, Wrighton KC. Borton MA, et al. Among authors: mcgivern bb. bioRxiv [Preprint]. 2023 Jul 26:2023.07.22.550117. doi: 10.1101/2023.07.22.550117. bioRxiv. 2023. Update in: Nature. 2025 Jan;637(8044):103-112. doi: 10.1038/s41586-024-08240-z PMID: 37502915 Free PMC article. Updated. Preprint.
DRAM for distilling microbial metabolism to automate the curation of microbiome function.
Shaffer M, Borton MA, McGivern BB, Zayed AA, La Rosa SL, Solden LM, Liu P, Narrowe AB, Rodríguez-Ramos J, Bolduc B, Gazitúa MC, Daly RA, Smith GJ, Vik DR, Pope PB, Sullivan MB, Roux S, Wrighton KC. Shaffer M, et al. Among authors: mcgivern bb. Nucleic Acids Res. 2020 Sep 18;48(16):8883-8900. doi: 10.1093/nar/gkaa621. Nucleic Acids Res. 2020. PMID: 32766782 Free PMC article.
Decrypting bacterial polyphenol metabolism in an anoxic wetland soil.
McGivern BB, Tfaily MM, Borton MA, Kosina SM, Daly RA, Nicora CD, Purvine SO, Wong AR, Lipton MS, Hoyt DW, Northen TR, Hagerman AE, Wrighton KC. McGivern BB, et al. Nat Commun. 2021 Apr 29;12(1):2466. doi: 10.1038/s41467-021-22765-1. Nat Commun. 2021. PMID: 33927199 Free PMC article.
Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function.
Seitz VA, McGivern BB, Daly RA, Chaparro JM, Borton MA, Sheflin AM, Kresovich S, Shields L, Schipanski ME, Wrighton KC, Prenni JE. Seitz VA, et al. Among authors: mcgivern bb. Appl Environ Microbiol. 2022 Jun 14;88(11):e0022622. doi: 10.1128/aem.00226-22. Epub 2022 May 10. Appl Environ Microbiol. 2022. PMID: 35536051 Free PMC article.
Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments.
Rodríguez-Ramos JA, Borton MA, McGivern BB, Smith GJ, Solden LM, Shaffer M, Daly RA, Purvine SO, Nicora CD, Eder EK, Lipton M, Hoyt DW, Stegen JC, Wrighton KC. Rodríguez-Ramos JA, et al. Among authors: mcgivern bb. mSystems. 2022 Aug 30;7(4):e0051622. doi: 10.1128/msystems.00516-22. Epub 2022 Jul 21. mSystems. 2022. PMID: 35861508 Free PMC article.
Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost.
Ellenbogen JB, Borton MA, McGivern BB, Cronin DR, Hoyt DW, Freire-Zapata V, McCalley CK, Varner RK, Crill PM, Wehr RA, Chanton JP, Woodcroft BJ, Tfaily MM, Tyson GW, Rich VI, Wrighton KC. Ellenbogen JB, et al. Among authors: mcgivern bb. mSystems. 2024 Jan 23;9(1):e0069823. doi: 10.1128/msystems.00698-23. Epub 2023 Dec 8. mSystems. 2024. PMID: 38063415 Free PMC article.
Untargeted, tandem mass spectrometry metaproteome of Columbia River sediments.
Rodríguez-Ramos J, Nicora CD, Purvine SO, Borton MA, McGivern BB, Hoyt DW, Lipton MS, Wrighton KC. Rodríguez-Ramos J, et al. Among authors: mcgivern bb. Microbiol Resour Announc. 2024 Jun 11;13(6):e0003324. doi: 10.1128/mra.00033-24. Epub 2024 Apr 23. Microbiol Resour Announc. 2024. PMID: 38651910 Free PMC article.
17 results