Osterman AL - Search Results

1

Prevotella copri-related effects of a therapeutic food for malnutrition.

Chang HW, Lee EM, Wang Y, Zhou C, Pruss KM, Henrissat S, Chen RY, Kao C, Hibberd MC, Lynn HM, Webber DM, Crane M, Cheng J, Rodionov DA, Arzamasov AA, Castillo JJ, Couture G, Chen Y, Balcazo NP Jr, Lebrilla CB, Terrapon N, Henrissat B, Ilkayeva O, Muehlbauer MJ, Newgard CB, Mostafa I, Das S, Mahfuz M, Osterman AL, Barratt MJ, Ahmed T, Gordon JI. Chang HW, et al. Among authors: osterman al. bioRxiv [Preprint]. 2023 Dec 20:2023.08.11.553030. doi: 10.1101/2023.08.11.553030. bioRxiv. 2023. Update in: Nat Microbiol. 2024 Apr;9(4):922-937. doi: 10.1038/s41564-024-01628-7 PMID: 37645712 Free PMC article. Updated. Preprint.

2

Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis.

Yang C, Rodionov DA, Li X, Laikova ON, Gelfand MS, Zagnitko OP, Romine MF, Obraztsova AY, Nealson KH, Osterman AL. Yang C, et al. Among authors: osterman al. J Biol Chem. 2006 Oct 6;281(40):29872-85. doi: 10.1074/jbc.M605052200. Epub 2006 Jul 20. J Biol Chem. 2006. PMID: 16857666 Free article.

3

Genomic identification and in vitro reconstitution of a complete biosynthetic pathway for the osmolyte di-myo-inositol-phosphate.

Rodionov DA, Kurnasov OV, Stec B, Wang Y, Roberts MF, Osterman AL. Rodionov DA, et al. Among authors: osterman al. Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4279-84. doi: 10.1073/pnas.0609279104. Epub 2007 Mar 2. Proc Natl Acad Sci U S A. 2007. PMID: 17360515 Free PMC article.

4

Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways.

Yang C, Rodionov DA, Rodionova IA, Li X, Osterman AL. Yang C, et al. Among authors: osterman al. J Bacteriol. 2008 Mar;190(5):1773-82. doi: 10.1128/JB.01469-07. Epub 2007 Dec 21. J Bacteriol. 2008. PMID: 18156253 Free PMC article.

5

Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators.

Rodionov DA, De Ingeniis J, Mancini C, Cimadamore F, Zhang H, Osterman AL, Raffaelli N. Rodionov DA, et al. Among authors: osterman al. Nucleic Acids Res. 2008 Apr;36(6):2047-59. doi: 10.1093/nar/gkn047. Epub 2008 Feb 14. Nucleic Acids Res. 2008. PMID: 18276643 Free PMC article.

6

Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.

Rodionov DA, Li X, Rodionova IA, Yang C, Sorci L, Dervyn E, Martynowski D, Zhang H, Gelfand MS, Osterman AL. Rodionov DA, et al. Among authors: osterman al. Nucleic Acids Res. 2008 Apr;36(6):2032-46. doi: 10.1093/nar/gkn046. Epub 2008 Feb 14. Nucleic Acids Res. 2008. PMID: 18276644 Free PMC article.

7

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus.

Rodionov DA, Yang C, Li X, Rodionova IA, Wang Y, Obraztsova AY, Zagnitko OP, Overbeek R, Romine MF, Reed S, Fredrickson JK, Nealson KH, Osterman AL. Rodionov DA, et al. Among authors: osterman al. BMC Genomics. 2010 Sep 13;11:494. doi: 10.1186/1471-2164-11-494. BMC Genomics. 2010. PMID: 20836887 Free PMC article.

8

Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence.

Ravcheev DA, Best AA, Tintle N, Dejongh M, Osterman AL, Novichkov PS, Rodionov DA. Ravcheev DA, et al. Among authors: osterman al. J Bacteriol. 2011 Jul;193(13):3228-40. doi: 10.1128/JB.00350-11. Epub 2011 Apr 29. J Bacteriol. 2011. PMID: 21531804 Free PMC article.

9

Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis.

Leyn SA, Li X, Zheng Q, Novichkov PS, Reed S, Romine MF, Fredrickson JK, Yang C, Osterman AL, Rodionov DA. Leyn SA, et al. Among authors: osterman al. J Biol Chem. 2011 Oct 14;286(41):35782-35794. doi: 10.1074/jbc.M111.267963. Epub 2011 Aug 17. J Biol Chem. 2011. PMID: 21849503 Free PMC article.

10

Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex.

Ravcheev DA, Li X, Latif H, Zengler K, Leyn SA, Korostelev YD, Kazakov AE, Novichkov PS, Osterman AL, Rodionov DA. Ravcheev DA, et al. Among authors: osterman al. J Bacteriol. 2012 Mar;194(5):1145-57. doi: 10.1128/JB.06412-11. Epub 2011 Dec 30. J Bacteriol. 2012. PMID: 22210771 Free PMC article.

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