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Page 1
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2.
Papudeshi B, Vega AA, Souza C, Giles SK, Mallawaarachchi V, Roach MJ, An M, Jacobson N, McNair K, Fernanda Mora M, Pastrana K, Boling L, Leigh C, Harker C, Plewa WS, Grigson SR, Bouras G, Decewicz P, Luque A, Droit L, Handley SA, Wang D, Segall AM, Dinsdale EA, Edwards RA. Papudeshi B, et al. Among authors: vega aa. Microb Genom. 2023 Sep;9(9):001100. doi: 10.1099/mgen.0.001100. Microb Genom. 2023. PMID: 37665209 Free PMC article.
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.
Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torre… See abstract for full author list ➔ Edwards RA, et al. Among authors: vega aa. Nat Microbiol. 2019 Oct;4(10):1727-1736. doi: 10.1038/s41564-019-0494-6. Epub 2019 Jul 8. Nat Microbiol. 2019. PMID: 31285584 Free PMC article.
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2.
Papudeshi B, Vega AA, Souza C, Giles SK, Mallawaarachchi V, Roach MJ, An M, Jacobson N, McNair K, Mora MF, Pastrana K, Boling L, Leigh C, Harker C, Plewa WS, Grigson SR, Bouras G, Decewicz P, Luque A, Droit L, Handley SA, Wang D, Segall AM, Dinsdale EA, Edwards RA. Papudeshi B, et al. Among authors: vega aa. bioRxiv [Preprint]. 2023 Jul 26:2023.03.05.531146. doi: 10.1101/2023.03.05.531146. bioRxiv. 2023. Update in: Microb Genom. 2023 Sep;9(9). doi: 10.1099/mgen.0.001100 PMID: 36945541 Free PMC article. Updated. Preprint.
Compounding Achromobacter Phages for Therapeutic Applications.
Cobián Güemes AG, Le T, Rojas MI, Jacobson NE, Villela H, McNair K, Hung SH, Han L, Boling L, Octavio JC, Dominguez L, Cantú VA, Archdeacon S, Vega AA, An MA, Hajama H, Burkeen G, Edwards RA, Conrad DJ, Rohwer F, Segall AM. Cobián Güemes AG, et al. Among authors: vega aa. Viruses. 2023 Jul 30;15(8):1665. doi: 10.3390/v15081665. Viruses. 2023. PMID: 37632008 Free PMC article.
Draft genomes of 12 Bifidobacterium isolates from human IBD fecal samples.
Souza CE, Jacobson NE, An MA, Droit L, Vega AA, Rosales M, Mihindukulasuriya KA, Pastrana K, Handley SA, Parkes M, Rimmer J, Wang D, Dinsdale EA, A Edwards R, Segall AM. Souza CE, et al. Among authors: vega aa. Microbiol Resour Announc. 2024 Jan 17;13(1):e0013023. doi: 10.1128/mra.00130-23. Epub 2023 Dec 15. Microbiol Resour Announc. 2024. PMID: 38099679 Free PMC article.
phage therapy candidates from Sphae: An automated toolkit for predicting sequencing data.
Papudeshi B, Roach MJ, Mallawaarachchi V, Bouras G, Grigson SR, Giles SK, Harker CM, Hutton ALK, Tarasenko A, Inglis LK, Vega AA, Souza C, Boling L, Hajama H, Cobián Güemes AG, Segall AM, Dinsdale EA, Edwards RA. Papudeshi B, et al. Among authors: vega aa. bioRxiv [Preprint]. 2024 Nov 18:2024.11.18.624194. doi: 10.1101/2024.11.18.624194. bioRxiv. 2024. PMID: 39605506 Free PMC article. Preprint.
Methionine-producing tumor micro(be) environment fuels growth of solid tumors.
Vega AA, Marshall EA, Noonan AJC, Filho FSL, Yang J, Stewart GL, Johnson FD, Vucic EA, Pewarchuk ME, Shah PP, Clem BF, Nislow C, Lam S, Lockwood WW, Hallam SJ, Leung JM, Beverly LJ, Lam WL. Vega AA, et al. Cell Oncol (Dordr). 2023 Dec;46(6):1659-1673. doi: 10.1007/s13402-023-00832-7. Epub 2023 Jun 15. Cell Oncol (Dordr). 2023. PMID: 37318751 Free PMC article.
Human APOBEC3B promotes tumor heterogeneity in vivo including signature mutations and metastases.
Durfee C, Temiz NA, Levin-Klein R, Argyris PP, Alsøe L, Carracedo S, de la Vega AA, Proehl J, Holzhauer AM, Seeman ZJ, Lin YT, Vogel RI, Sotillo R, Nilsen H, Harris RS. Durfee C, et al. Among authors: de la vega aa. bioRxiv [Preprint]. 2023 Feb 25:2023.02.24.529970. doi: 10.1101/2023.02.24.529970. bioRxiv. 2023. Update in: Cell Rep Med. 2023 Oct 17;4(10):101211. doi: 10.1016/j.xcrm.2023.101211 PMID: 36865194 Free PMC article. Updated. Preprint.
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