Shi L - Search Results

1

Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling.

Yu Y, Hou W, Liu Y, Wang H, Dong L, Mai Y, Chen Q, Li Z, Sun S, Yang J, Cao Z, Zhang P, Zi Y, Liu R, Gao J, Zhang N, Li J, Ren L, Jiang H, Shang J, Zhu S, Wang X, Qing T, Bao D, Li B, Li B, Suo C, Pi Y, Wang X, Dai F, Scherer A, Mattila P, Han J, Zhang L, Jiang H, Thierry-Mieg D, Thierry-Mieg J, Xiao W, Hong H, Tong W, Wang J, Li J, Fang X, Jin L, Xu J, Qian F, Zhang R, Shi L, Zheng Y. Yu Y, et al. Among authors: shi l. Nat Biotechnol. 2024 Jul;42(7):1118-1132. doi: 10.1038/s41587-023-01867-9. Epub 2023 Sep 7. Nat Biotechnol. 2024. PMID: 37679545 Free PMC article.

2

Prediction of estrogen receptor binding for 58,000 chemicals using an integrated system of a tree-based model with structural alerts.

Hong H, Tong W, Fang H, Shi L, Xie Q, Wu J, Perkins R, Walker JD, Branham W, Sheehan DM. Hong H, et al. Among authors: shi l. Environ Health Perspect. 2002 Jan;110(1):29-36. doi: 10.1289/ehp.0211029. Environ Health Perspect. 2002. PMID: 11781162 Free PMC article.

3

Structure-activity relationship approaches and applications.

Tong W, Welsh WJ, Shi L, Fang H, Perkins R. Tong W, et al. Among authors: shi l. Environ Toxicol Chem. 2003 Aug;22(8):1680-95. doi: 10.1897/01-198. Environ Toxicol Chem. 2003. PMID: 12924570 Review.

4

ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research.

Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, Shi L, Casciano D. Tong W, et al. Among authors: shi l. Environ Health Perspect. 2003 Nov;111(15):1819-26. doi: 10.1289/ehp.6497. Environ Health Perspect. 2003. PMID: 14630514 Free PMC article. Review.

5

Assessment of prediction confidence and domain extrapolation of two structure-activity relationship models for predicting estrogen receptor binding activity.

Tong W, Xie Q, Hong H, Shi L, Fang H, Perkins R. Tong W, et al. Among authors: shi l. Environ Health Perspect. 2004 Aug;112(12):1249-54. doi: 10.1289/txg.7125. Environ Health Perspect. 2004. PMID: 15345371 Free PMC article.

6

QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies.

Shi L, Tong W, Goodsaid F, Frueh FW, Fang H, Han T, Fuscoe JC, Casciano DA. Shi L, et al. Expert Rev Mol Diagn. 2004 Nov;4(6):761-77. doi: 10.1586/14737159.4.6.761. Expert Rev Mol Diagn. 2004. PMID: 15525219 Review.

7

Multiclass Decision Forest--a novel pattern recognition method for multiclass classification in microarray data analysis.

Hong H, Tong W, Perkins R, Fang H, Xie Q, Shi L. Hong H, et al. Among authors: shi l. DNA Cell Biol. 2004 Oct;23(10):685-94. doi: 10.1089/dna.2004.23.685. DNA Cell Biol. 2004. PMID: 15585126

8

Using decision forest to classify prostate cancer samples on the basis of SELDI-TOF MS data: assessing chance correlation and prediction confidence.

Tong W, Xie Q, Hong H, Shi L, Fang H, Perkins R, Petricoin EF. Tong W, et al. Among authors: shi l. Environ Health Perspect. 2004 Nov;112(16):1622-7. doi: 10.1289/txg.7109. Environ Health Perspect. 2004. PMID: 15598613 Free PMC article.

9

Microarray scanner calibration curves: characteristics and implications.

Shi L, Tong W, Su Z, Han T, Han J, Puri RK, Fang H, Frueh FW, Goodsaid FM, Guo L, Branham WS, Chen JJ, Xu ZA, Harris SC, Hong H, Xie Q, Perkins RG, Fuscoe JC. Shi L, et al. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S11. doi: 10.1186/1471-2105-6-S2-S11. BMC Bioinformatics. 2005. PMID: 16026596 Free PMC article.

10

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential.

Shi L, Tong W, Fang H, Scherf U, Han J, Puri RK, Frueh FW, Goodsaid FM, Guo L, Su Z, Han T, Fuscoe JC, Xu ZA, Patterson TA, Hong H, Xie Q, Perkins RG, Chen JJ, Casciano DA. Shi L, et al. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S12. doi: 10.1186/1471-2105-6-S2-S12. BMC Bioinformatics. 2005. PMID: 16026597 Free PMC article.

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