Yosef N - Search Results

1

Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells.

Gayoso A, Weiler P, Lotfollahi M, Klein D, Hong J, Streets A, Theis FJ, Yosef N. Gayoso A, et al. Among authors: yosef n. Nat Methods. 2024 Jan;21(1):50-59. doi: 10.1038/s41592-023-01994-w. Epub 2023 Sep 21. Nat Methods. 2024. PMID: 37735568 Free PMC article.

2

A complex-centric view of protein network evolution.

Yosef N, Kupiec M, Ruppin E, Sharan R. Yosef N, et al. Nucleic Acids Res. 2009 Jul;37(12):e88. doi: 10.1093/nar/gkp414. Epub 2009 May 22. Nucleic Acids Res. 2009. PMID: 19465379 Free PMC article.

3

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals.

Garber M, Yosef N, Goren A, Raychowdhury R, Thielke A, Guttman M, Robinson J, Minie B, Chevrier N, Itzhaki Z, Blecher-Gonen R, Bornstein C, Amann-Zalcenstein D, Weiner A, Friedrich D, Meldrim J, Ram O, Cheng C, Gnirke A, Fisher S, Friedman N, Wong B, Bernstein BE, Nusbaum C, Hacohen N, Regev A, Amit I. Garber M, et al. Among authors: yosef n. Mol Cell. 2012 Sep 14;47(5):810-22. doi: 10.1016/j.molcel.2012.07.030. Epub 2012 Aug 30. Mol Cell. 2012. PMID: 22940246 Free PMC article.

4

Impulse control: temporal dynamics in gene transcription.

Yosef N, Regev A. Yosef N, et al. Cell. 2011 Mar 18;144(6):886-96. doi: 10.1016/j.cell.2011.02.015. Cell. 2011. PMID: 21414481 Free PMC article. Review.

5

ANAT: a tool for constructing and analyzing functional protein networks.

Yosef N, Zalckvar E, Rubinstein AD, Homilius M, Atias N, Vardi L, Berman I, Zur H, Kimchi A, Ruppin E, Sharan R. Yosef N, et al. Sci Signal. 2011 Oct 25;4(196):pl1. doi: 10.1126/scisignal.2001935. Sci Signal. 2011. PMID: 22028466

6

Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells.

Ram O, Goren A, Amit I, Shoresh N, Yosef N, Ernst J, Kellis M, Gymrek M, Issner R, Coyne M, Durham T, Zhang X, Donaghey J, Epstein CB, Regev A, Bernstein BE. Ram O, et al. Among authors: yosef n. Cell. 2011 Dec 23;147(7):1628-39. doi: 10.1016/j.cell.2011.09.057. Cell. 2011. PMID: 22196736 Free PMC article.

7

A genome-wide screen for essential yeast genes that affect telomere length maintenance.

Ungar L, Yosef N, Sela Y, Sharan R, Ruppin E, Kupiec M. Ungar L, et al. Among authors: yosef n. Nucleic Acids Res. 2009 Jul;37(12):3840-9. doi: 10.1093/nar/gkp259. Epub 2009 Apr 22. Nucleic Acids Res. 2009. PMID: 19386622 Free PMC article.

8

Systematic discovery of TLR signaling components delineates viral-sensing circuits.

Chevrier N, Mertins P, Artyomov MN, Shalek AK, Iannacone M, Ciaccio MF, Gat-Viks I, Tonti E, DeGrace MM, Clauser KR, Garber M, Eisenhaure TM, Yosef N, Robinson J, Sutton A, Andersen MS, Root DE, von Andrian U, Jones RB, Park H, Carr SA, Regev A, Amit I, Hacohen N. Chevrier N, et al. Among authors: yosef n. Cell. 2011 Nov 11;147(4):853-67. doi: 10.1016/j.cell.2011.10.022. Cell. 2011. PMID: 22078882 Free PMC article.

9

A novel HMM-based method for detecting enriched transcription factor binding sites reveals RUNX3 as a potential target in pancreatic cancer biology.

Levkovitz L, Yosef N, Gershengorn MC, Ruppin E, Sharan R, Oron Y. Levkovitz L, et al. Among authors: yosef n. PLoS One. 2010 Dec 22;5(12):e14423. doi: 10.1371/journal.pone.0014423. PLoS One. 2010. PMID: 21203558 Free PMC article.

10

Toward accurate reconstruction of functional protein networks.

Yosef N, Ungar L, Zalckvar E, Kimchi A, Kupiec M, Ruppin E, Sharan R. Yosef N, et al. Mol Syst Biol. 2009;5:248. doi: 10.1038/msb.2009.3. Epub 2009 Mar 17. Mol Syst Biol. 2009. PMID: 19293828 Free PMC article.

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