Ji H - Search Results

1

Single-cell allele-specific expression analysis reveals dynamic and cell-type-specific regulatory effects.

Qi G, Strober BJ, Popp JM, Keener R, Ji H, Battle A. Qi G, et al. Among authors: ji h. Nat Commun. 2023 Oct 9;14(1):6317. doi: 10.1038/s41467-023-42016-9. Nat Commun. 2023. PMID: 37813843 Free PMC article.

2

Genome-wide prediction of DNase I hypersensitivity using gene expression.

Zhou W, Sherwood B, Ji Z, Xue Y, Du F, Bai J, Ying M, Ji H. Zhou W, et al. Among authors: ji h, ji z. Nat Commun. 2017 Oct 19;8(1):1038. doi: 10.1038/s41467-017-01188-x. Nat Commun. 2017. PMID: 29051481 Free PMC article.

3

ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration.

Wang J, Zibetti C, Shang P, Sripathi SR, Zhang P, Cano M, Hoang T, Xia S, Ji H, Merbs SL, Zack DJ, Handa JT, Sinha D, Blackshaw S, Qian J. Wang J, et al. Among authors: ji h. Nat Commun. 2018 Apr 10;9(1):1364. doi: 10.1038/s41467-018-03856-y. Nat Commun. 2018. PMID: 29636475 Free PMC article.

4

Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells.

Chamling X, Kallman A, Fang W, Berlinicke CA, Mertz JL, Devkota P, Pantoja IEM, Smith MD, Ji Z, Chang C, Kaushik A, Chen L, Whartenby KA, Calabresi PA, Mao HQ, Ji H, Wang TH, Zack DJ. Chamling X, et al. Among authors: ji h, ji z. Nat Commun. 2021 Jan 28;12(1):652. doi: 10.1038/s41467-021-20892-3. Nat Commun. 2021. PMID: 33510160 Free PMC article.

5

GLI transcriptional repression is inert prior to Hedgehog pathway activation.

Lex RK, Zhou W, Ji Z, Falkenstein KN, Schuler KE, Windsor KE, Kim JD, Ji H, Vokes SA. Lex RK, et al. Among authors: ji h, ji z. Nat Commun. 2022 Feb 10;13(1):808. doi: 10.1038/s41467-022-28485-4. Nat Commun. 2022. PMID: 35145123 Free PMC article.

6

Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST.

Liu W, Liao X, Luo Z, Yang Y, Lau MC, Jiao Y, Shi X, Zhai W, Ji H, Yeong J, Liu J. Liu W, et al. Among authors: ji h. Nat Commun. 2023 Jan 18;14(1):296. doi: 10.1038/s41467-023-35947-w. Nat Commun. 2023. PMID: 36653349 Free PMC article.

7

A statistical framework for differential pseudotime analysis with multiple single-cell RNA-seq samples.

Hou W, Ji Z, Chen Z, Wherry EJ, Hicks SC, Ji H. Hou W, et al. Among authors: ji h, ji z. Nat Commun. 2023 Nov 10;14(1):7286. doi: 10.1038/s41467-023-42841-y. Nat Commun. 2023. PMID: 37949861 Free PMC article.

8

Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo.

Liao X, Kang L, Peng Y, Chai X, Xie P, Lin C, Ji H, Jiao Y, Liu J. Liao X, et al. Among authors: ji h. Nat Commun. 2024 Dec 30;15(1):10849. doi: 10.1038/s41467-024-55146-5. Nat Commun. 2024. PMID: 39738101 Free PMC article.

9

An integrated software system for analyzing ChIP-chip and ChIP-seq data.

Ji H, Jiang H, Ma W, Johnson DS, Myers RM, Wong WH. Ji H, et al. Nat Biotechnol. 2008 Nov;26(11):1293-300. doi: 10.1038/nbt.1505. Epub 2008 Nov 2. Nat Biotechnol. 2008. PMID: 18978777 Free PMC article.

10

Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes.

Wang J, Xia S, Arand B, Zhu H, Machiraju R, Huang K, Ji H, Qian J. Wang J, et al. Among authors: ji h. PLoS Comput Biol. 2016 Apr 21;12(4):e1004892. doi: 10.1371/journal.pcbi.1004892. eCollection 2016 Apr. PLoS Comput Biol. 2016. PMID: 27100869 Free PMC article.

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