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Page 1
Unraveling the functional dark matter through global metagenomics.
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E; Novel Metagenome Protein Families Consortium; Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC. Pavlopoulos GA, et al. Among authors: call l. Nature. 2023 Oct;622(7983):594-602. doi: 10.1038/s41586-023-06583-7. Epub 2023 Oct 11. Nature. 2023. PMID: 37821698 Free PMC article.
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.
Nayfach S, Páez-Espino D, Call L, Low SJ, Sberro H, Ivanova NN, Proal AD, Fischbach MA, Bhatt AS, Hugenholtz P, Kyrpides NC. Nayfach S, et al. Among authors: call l. Nat Microbiol. 2021 Jul;6(7):960-970. doi: 10.1038/s41564-021-00928-6. Epub 2021 Jun 24. Nat Microbiol. 2021. PMID: 34168315 Free PMC article.
Illuminating the Virosphere Through Global Metagenomics.
Call L, Nayfach S, Kyrpides NC. Call L, et al. Annu Rev Biomed Data Sci. 2021 Jul 20;4:369-391. doi: 10.1146/annurev-biodatasci-012221-095114. Annu Rev Biomed Data Sci. 2021. PMID: 34465172
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
Camargo AP, Nayfach S, Chen IA, Palaniappan K, Ratner A, Chu K, Ritter SJ, Reddy TBK, Mukherjee S, Schulz F, Call L, Neches RY, Woyke T, Ivanova NN, Eloe-Fadrosh EA, Kyrpides NC, Roux S. Camargo AP, et al. Among authors: call l. Nucleic Acids Res. 2023 Jan 6;51(D1):D733-D743. doi: 10.1093/nar/gkac1037. Nucleic Acids Res. 2023. PMID: 36399502 Free PMC article.
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes.
Seshadri R, Roux S, Huber KJ, Wu D, Yu S, Udwary D, Call L, Nayfach S, Hahnke RL, Pukall R, White JR, Varghese NJ, Webb C, Palaniappan K, Reimer LC, Sardà J, Bertsch J, Mukherjee S, Reddy TBK, Hajek PP, Huntemann M, Chen IA, Spunde A, Clum A, Shapiro N, Wu ZY, Zhao Z, Zhou Y, Evtushenko L, Thijs S, Stevens V, Eloe-Fadrosh EA, Mouncey NJ, Yoshikuni Y, Whitman WB, Klenk HP, Woyke T, Göker M, Kyrpides NC, Ivanova NN. Seshadri R, et al. Among authors: call l. Cell Genom. 2022 Nov 11;2(12):100213. doi: 10.1016/j.xgen.2022.100213. eCollection 2022 Dec 14. Cell Genom. 2022. PMID: 36778052 Free PMC article.
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.
Camargo AP, Call L, Roux S, Nayfach S, Huntemann M, Palaniappan K, Ratner A, Chu K, Mukherjeep S, Reddy TBK, Chen IA, Ivanova NN, Eloe-Fadrosh EA, Woyke T, Baltrus DA, Castañeda-Barba S, de la Cruz F, Funnell BE, Hall JPJ, Mukhopadhyay A, Rocha EPC, Stalder T, Top E, Kyrpides NC. Camargo AP, et al. Among authors: call l. Nucleic Acids Res. 2024 Jan 5;52(D1):D164-D173. doi: 10.1093/nar/gkad964. Nucleic Acids Res. 2024. PMID: 37930866 Free PMC article.
CBFA2T3-GLIS2 model of pediatric acute megakaryoblastic leukemia identifies FOLR1 as a CAR T cell target.
Le Q, Hadland B, Smith JL, Leonti A, Huang BJ, Ries R, Hylkema TA, Castro S, Tang TT, McKay CN, Perkins L, Pardo L, Sarthy J, Beckman AK, Williams R, Idemmili R, Furlan S, Ishida T, Call L, Srivastava S, Loeb AM, Milano F, Imren S, Morris SM, Pakiam F, Olson JM, Loken MR, Brodersen L, Riddell SR, Tarlock K, Bernstein ID, Loeb KR, Meshinchi S. Le Q, et al. Among authors: call l. J Clin Invest. 2024 Aug 15;134(16):e184305. doi: 10.1172/JCI184305. J Clin Invest. 2024. PMID: 39145456 Free PMC article. No abstract available.
Does sourdough bread provide clinically relevant health benefits?
D'Amico V, Gänzle M, Call L, Zwirzitz B, Grausgruber H, D'Amico S, Brouns F. D'Amico V, et al. Among authors: call l. Front Nutr. 2023 Jul 20;10:1230043. doi: 10.3389/fnut.2023.1230043. eCollection 2023. Front Nutr. 2023. PMID: 37545587 Free PMC article. Review.
43 results