Ruthenburg AJ - Search Results

1

Merging short and stranded long reads improves transcript assembly.

Kainth AS, Haddad GA, Hall JM, Ruthenburg AJ. Kainth AS, et al. Among authors: ruthenburg aj. PLoS Comput Biol. 2023 Oct 26;19(10):e1011576. doi: 10.1371/journal.pcbi.1011576. eCollection 2023 Oct. PLoS Comput Biol. 2023. PMID: 37883581 Free PMC article.

2

Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions.

Ruthenburg AJ, Li H, Milne TA, Dewell S, McGinty RK, Yuen M, Ueberheide B, Dou Y, Muir TW, Patel DJ, Allis CD. Ruthenburg AJ, et al. Cell. 2011 May 27;145(5):692-706. doi: 10.1016/j.cell.2011.03.053. Epub 2011 May 19. Cell. 2011. PMID: 21596426 Free PMC article.

3

Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex.

Ruthenburg AJ, Wang W, Graybosch DM, Li H, Allis CD, Patel DJ, Verdine GL. Ruthenburg AJ, et al. Nat Struct Mol Biol. 2006 Aug;13(8):704-12. doi: 10.1038/nsmb1119. Epub 2006 Jul 9. Nat Struct Mol Biol. 2006. PMID: 16829959 Free PMC article.

4

Nucleotide-dependent domain movement in the ATPase domain of a human type IIA DNA topoisomerase.

Wei H, Ruthenburg AJ, Bechis SK, Verdine GL. Wei H, et al. Among authors: ruthenburg aj. J Biol Chem. 2005 Nov 4;280(44):37041-7. doi: 10.1074/jbc.M506520200. Epub 2005 Aug 12. J Biol Chem. 2005. PMID: 16100112 Free article.

5

Multiple interactions recruit MLL1 and MLL1 fusion proteins to the HOXA9 locus in leukemogenesis.

Milne TA, Kim J, Wang GG, Stadler SC, Basrur V, Whitcomb SJ, Wang Z, Ruthenburg AJ, Elenitoba-Johnson KS, Roeder RG, Allis CD. Milne TA, et al. Among authors: ruthenburg aj. Mol Cell. 2010 Jun 25;38(6):853-63. doi: 10.1016/j.molcel.2010.05.011. Epub 2010 Jun 10. Mol Cell. 2010. PMID: 20541448 Free PMC article.

6

Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark.

Ruthenburg AJ, Allis CD, Wysocka J. Ruthenburg AJ, et al. Mol Cell. 2007 Jan 12;25(1):15-30. doi: 10.1016/j.molcel.2006.12.014. Mol Cell. 2007. PMID: 17218268 Free article. Review.

7

A superhelical spiral in the Escherichia coli DNA gyrase A C-terminal domain imparts unidirectional supercoiling bias.

Ruthenburg AJ, Graybosch DM, Huetsch JC, Verdine GL. Ruthenburg AJ, et al. J Biol Chem. 2005 Jul 15;280(28):26177-84. doi: 10.1074/jbc.M502838200. Epub 2005 May 15. J Biol Chem. 2005. PMID: 15897198 Free article.

8

How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers.

Taverna SD, Li H, Ruthenburg AJ, Allis CD, Patel DJ. Taverna SD, et al. Among authors: ruthenburg aj. Nat Struct Mol Biol. 2007 Nov;14(11):1025-1040. doi: 10.1038/nsmb1338. Epub 2007 Nov 5. Nat Struct Mol Biol. 2007. PMID: 17984965 Free PMC article. Review.

9

Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythm.

Yang XH, Nadadur RD, Hilvering CR, Bianchi V, Werner M, Mazurek SR, Gadek M, Shen KM, Goldman JA, Tyan L, Bekeny J, Hall JM, Lee N, Perez-Cervantes C, Burnicka-Turek O, Poss KD, Weber CR, de Laat W, Ruthenburg AJ, Moskowitz IP. Yang XH, et al. Among authors: ruthenburg aj. Elife. 2017 Dec 27;6:e31683. doi: 10.7554/eLife.31683. Elife. 2017. PMID: 29280435 Free PMC article.

10

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq.

Sun X, Wang Z, Hall JM, Perez-Cervantes C, Ruthenburg AJ, Moskowitz IP, Gribskov M, Yang XH. Sun X, et al. Among authors: ruthenburg aj. PLoS Comput Biol. 2020 Feb 10;16(2):e1007119. doi: 10.1371/journal.pcbi.1007119. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32040509 Free PMC article.

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